SMTL ID : 6d3i.1

ftv7 dioxygenase with 2,4-D bound

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 3.20 Å

Oligo State

homo-tetramer

Ligands

4 x CO: COBALT (II) ION(Non-covalent)

CO.1: 4 residues within 4Å: Chain A: H.111, D.113, H.270 Ligands: AKG.2 3 PLIP interactions: 3 interactions with chain A Metal complexes: A:H.111, A:D.113, A:H.270 CO.3: 4 residues within 4Å: Chain B: H.111, D.113, H.270 Ligands: AKG.4 3 PLIP interactions: 3 interactions with chain B Metal complexes: B:H.111, B:D.113, B:H.270 CO.6: 4 residues within 4Å: Chain C: H.111, D.113, H.270 Ligands: AKG.7 3 PLIP interactions: 3 interactions with chain C Metal complexes: C:H.111, C:D.113, C:H.270 CO.9: 4 residues within 4Å: Chain D: H.111, D.113, H.270 Ligands: AKG.10 3 PLIP interactions: 3 interactions with chain D Metal complexes: D:H.111, D:D.113, D:H.270

4 x AKG: 2-OXOGLUTARIC ACID(Non-covalent)

AKG.2: 12 residues within 4Å: Chain A: I.95, I.106, G.107, H.111, D.113, M.126, T.138, W.263, A.272, R.281, R.285 Ligands: CO.1 5 PLIP interactions: 5 interactions with chain A Hydrophobic interactions: A:I.95 Hydrogen bonds: A:I.106 Salt bridges: A:H.111, A:R.281, A:R.285 AKG.4: 12 residues within 4Å: Chain B: I.95, I.106, G.107, H.111, D.113, M.126, T.138, H.270, A.272, R.281, R.285 Ligands: CO.3 6 PLIP interactions: 6 interactions with chain B Hydrophobic interactions: B:A.272 Hydrogen bonds: B:T.138 Salt bridges: B:H.111, B:H.270, B:R.281, B:R.285 AKG.7: 13 residues within 4Å: Chain C: I.95, I.106, H.111, D.113, M.126, T.138, W.263, H.270, A.272, R.281, R.285 Ligands: CO.6, CFA.8 6 PLIP interactions: 6 interactions with chain C Hydrophobic interactions: C:I.95 Hydrogen bonds: C:T.138 Salt bridges: C:H.111, C:H.270, C:R.281, C:R.285 AKG.10: 13 residues within 4Å: Chain D: I.95, I.106, G.107, H.111, D.113, M.126, T.138, W.263, H.270, A.272, R.281, R.285 Ligands: CO.9 6 PLIP interactions: 6 interactions with chain D Hydrophobic interactions: D:I.95, D:I.106 Salt bridges: D:H.111, D:H.270, D:R.281, D:R.285

2 x CFA: (2,4-DICHLOROPHENOXY)ACETIC ACID(Non-covalent)

CFA.5: 10 residues within 4Å: Chain B: V.80, I.82, I.106, G.107, D.108, H.111, D.113, S.114, V.220, Y.221 5 PLIP interactions: 5 interactions with chain B Hydrophobic interactions: B:I.106, B:V.220, B:Y.221 Hydrogen bonds: B:S.114 pi-Stacking: B:H.111 CFA.8: 12 residues within 4Å: Chain C: L.83, R.104, I.106, G.107, H.111, D.113, S.114, V.170, F.182, V.220, Y.221 Ligands: AKG.7 7 PLIP interactions: 7 interactions with chain C Hydrophobic interactions: C:V.170, C:F.182, C:V.220, C:V.220 Hydrogen bonds: C:S.114 pi-Stacking: C:H.111 Halogen bonds: C:R.104

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Larue, C.T. et al., Development of enzymes for robust aryloxyphenoxypropionate and synthetic auxin herbicide tolerance traits in maize and soybean crops. Pest Manag. Sci. (2019)

Release Date

2018-08-15

Peptides

ftv7 dioxygenase: ABCD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
D

C
G

D
J

ftv7 dioxygenase