SMTL ID : 6d3j.1

FT_T dioxygenase holoenzyme

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 3.00 Å

Oligo State

homo-tetramer

Ligands

48 x CO: COBALT (II) ION(Non-covalent)

CO.1: 4 residues within 4Å: Chain A: H.111, D.113, H.270 Ligands: AKG.2 4 PLIP interactions: 3 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:H.111, A:D.113, A:H.270, H2O.1 CO.3: 1 residues within 4Å: Chain A: D.16 1 PLIP interactions: 1 interactions with chain A Metal complexes: A:D.16 CO.4: 1 residues within 4Å: Chain A: E.35 1 PLIP interactions: 1 interactions with chain A Metal complexes: A:E.35 CO.5: 1 residues within 4Å: Chain A: E.65 No protein-ligand interaction detected (PLIP) CO.6: 1 residues within 4Å: Chain A: V.77 No protein-ligand interaction detected (PLIP) CO.7: 2 residues within 4Å: Chain A: D.118, E.198 2 PLIP interactions: 2 interactions with chain A Metal complexes: A:D.118, A:D.118 CO.8: 1 residues within 4Å: Chain A: D.230 No protein-ligand interaction detected (PLIP) CO.9: 4 residues within 4Å: Chain A: E.242, T.245 Ligands: CO.12, CO.38 2 PLIP interactions: 2 interactions with chain A Metal complexes: A:E.242, A:E.242 CO.10: 1 residues within 4Å: Chain A: E.27 1 PLIP interactions: 1 interactions with chain A Metal complexes: A:E.27 CO.11: 2 residues within 4Å: Chain A: D.108, D.109 1 PLIP interactions: 1 interactions with chain A Metal complexes: A:D.108 CO.12: 6 residues within 4Å: Chain A: E.242 Chain C: E.242, T.245 Ligands: CO.9, CO.35, CO.38 2 PLIP interactions: 1 interactions with chain A, 1 interactions with chain C Metal complexes: A:E.242, C:E.242 CO.13: 2 residues within 4Å: Chain A: E.242 Chain C: E.242 1 PLIP interactions: 1 interactions with chain A Metal complexes: A:E.242 CO.14: 4 residues within 4Å: Chain B: H.111, D.113, H.270 Ligands: AKG.15 4 PLIP interactions: 3 interactions with chain B, 1 Ligand-Water interactions Metal complexes: B:H.111, B:D.113, B:H.270, H2O.1 CO.16: 1 residues within 4Å: Chain B: D.16 1 PLIP interactions: 1 interactions with chain B Metal complexes: B:D.16 CO.17: 1 residues within 4Å: Chain B: E.35 1 PLIP interactions: 1 interactions with chain B Metal complexes: B:E.35 CO.18: 1 residues within 4Å: Chain B: E.65 No protein-ligand interaction detected (PLIP) CO.19: 1 residues within 4Å: Chain B: V.77 No protein-ligand interaction detected (PLIP) CO.20: 2 residues within 4Å: Chain B: D.118, E.198 2 PLIP interactions: 2 interactions with chain B Metal complexes: B:D.118, B:D.118 CO.21: 1 residues within 4Å: Chain B: D.230 No protein-ligand interaction detected (PLIP) CO.22: 4 residues within 4Å: Chain B: E.242, T.245 Ligands: CO.25, CO.51 2 PLIP interactions: 2 interactions with chain B Metal complexes: B:E.242, B:E.242 CO.23: 1 residues within 4Å: Chain B: E.27 1 PLIP interactions: 1 interactions with chain B Metal complexes: B:E.27 CO.24: 2 residues within 4Å: Chain B: D.108, D.109 1 PLIP interactions: 1 interactions with chain B Metal complexes: B:D.108 CO.25: 6 residues within 4Å: Chain B: E.242 Chain D: E.242, T.245 Ligands: CO.22, CO.48, CO.51 2 PLIP interactions: 1 interactions with chain B, 1 interactions with chain D Metal complexes: B:E.242, D:E.242 CO.26: 2 residues within 4Å: Chain B: E.242 Chain D: E.242 1 PLIP interactions: 1 interactions with chain B Metal complexes: B:E.242 CO.27: 4 residues within 4Å: Chain C: H.111, D.113, H.270 Ligands: AKG.28 4 PLIP interactions: 3 interactions with chain C, 1 Ligand-Water interactions Metal complexes: C:H.111, C:D.113, C:H.270, H2O.1 CO.29: 1 residues within 4Å: Chain C: D.16 1 PLIP interactions: 1 interactions with chain C Metal complexes: C:D.16 CO.30: 1 residues within 4Å: Chain C: E.35 1 PLIP interactions: 1 interactions with chain C Metal complexes: C:E.35 CO.31: 1 residues within 4Å: Chain C: E.65 No protein-ligand interaction detected (PLIP) CO.32: 1 residues within 4Å: Chain C: V.77 No protein-ligand interaction detected (PLIP) CO.33: 2 residues within 4Å: Chain C: D.118, E.198 2 PLIP interactions: 2 interactions with chain C Metal complexes: C:D.118, C:D.118 CO.34: 1 residues within 4Å: Chain C: D.230 No protein-ligand interaction detected (PLIP) CO.35: 4 residues within 4Å: Chain C: E.242, T.245 Ligands: CO.12, CO.38 2 PLIP interactions: 2 interactions with chain C Metal complexes: C:E.242, C:E.242 CO.36: 1 residues within 4Å: Chain C: E.27 1 PLIP interactions: 1 interactions with chain C Metal complexes: C:E.27 CO.37: 2 residues within 4Å: Chain C: D.108, D.109 1 PLIP interactions: 1 interactions with chain C Metal complexes: C:D.108 CO.38: 6 residues within 4Å: Chain A: E.242, T.245 Chain C: E.242 Ligands: CO.9, CO.12, CO.35 2 PLIP interactions: 1 interactions with chain C, 1 interactions with chain A Metal complexes: C:E.242, A:E.242 CO.39: 2 residues within 4Å: Chain A: E.242 Chain C: E.242 1 PLIP interactions: 1 interactions with chain C Metal complexes: C:E.242 CO.40: 4 residues within 4Å: Chain D: H.111, D.113, H.270 Ligands: AKG.41 4 PLIP interactions: 3 interactions with chain D, 1 Ligand-Water interactions Metal complexes: D:H.111, D:D.113, D:H.270, H2O.1 CO.42: 1 residues within 4Å: Chain D: D.16 1 PLIP interactions: 1 interactions with chain D Metal complexes: D:D.16 CO.43: 1 residues within 4Å: Chain D: E.35 1 PLIP interactions: 1 interactions with chain D Metal complexes: D:E.35 CO.44: 1 residues within 4Å: Chain D: E.65 No protein-ligand interaction detected (PLIP) CO.45: 1 residues within 4Å: Chain D: V.77 No protein-ligand interaction detected (PLIP) CO.46: 2 residues within 4Å: Chain D: D.118, E.198 2 PLIP interactions: 2 interactions with chain D Metal complexes: D:D.118, D:D.118 CO.47: 1 residues within 4Å: Chain D: D.230 No protein-ligand interaction detected (PLIP) CO.48: 4 residues within 4Å: Chain D: E.242, T.245 Ligands: CO.25, CO.51 2 PLIP interactions: 2 interactions with chain D Metal complexes: D:E.242, D:E.242 CO.49: 1 residues within 4Å: Chain D: E.27 1 PLIP interactions: 1 interactions with chain D Metal complexes: D:E.27 CO.50: 2 residues within 4Å: Chain D: D.108, D.109 1 PLIP interactions: 1 interactions with chain D Metal complexes: D:D.108 CO.51: 6 residues within 4Å: Chain B: E.242, T.245 Chain D: E.242 Ligands: CO.22, CO.25, CO.48 2 PLIP interactions: 1 interactions with chain B, 1 interactions with chain D Metal complexes: B:E.242, D:E.242 CO.52: 2 residues within 4Å: Chain B: E.242 Chain D: E.242 1 PLIP interactions: 1 interactions with chain D Metal complexes: D:E.242

4 x AKG: 2-OXOGLUTARIC ACID(Non-covalent)

AKG.2: 11 residues within 4Å: Chain A: I.95, G.107, H.111, D.113, M.126, T.138, W.263, H.270, R.281, R.285 Ligands: CO.1 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:T.138 Salt bridges: A:H.111, A:H.270, A:R.281, A:R.285 AKG.15: 11 residues within 4Å: Chain B: I.95, G.107, H.111, D.113, M.126, T.138, W.263, H.270, R.281, R.285 Ligands: CO.14 5 PLIP interactions: 5 interactions with chain B Hydrogen bonds: B:T.138 Salt bridges: B:H.111, B:H.270, B:R.281, B:R.285 AKG.28: 11 residues within 4Å: Chain C: I.95, G.107, H.111, D.113, M.126, T.138, W.263, H.270, R.281, R.285 Ligands: CO.27 5 PLIP interactions: 5 interactions with chain C Hydrogen bonds: C:T.138 Salt bridges: C:H.111, C:H.270, C:R.281, C:R.285 AKG.41: 11 residues within 4Å: Chain D: I.95, G.107, H.111, D.113, M.126, T.138, W.263, H.270, R.281, R.285 Ligands: CO.40 5 PLIP interactions: 5 interactions with chain D Hydrogen bonds: D:T.138 Salt bridges: D:H.111, D:H.270, D:R.281, D:R.285

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Larue, C.T. et al., Development of enzymes for robust aryloxyphenoxypropionate and synthetic auxin herbicide tolerance traits in maize and soybean crops. Pest Manag. Sci. (2019)

Release Date

2018-08-15

Peptides

FT_T dioxygenase: ABCD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

C
A

D
A

FT_T dioxygenase

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