SMTL ID : 6d3y.1

Highly Potent and Selective Plasmin Inhibitors Based on the Sunflower Trypsin Inhibitor-1 Scaffold Attenuate Fibrinolysis in Plasma

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.32 Å

Oligo State

hetero-1-1-mer

Ligands

1 x SO4: SULFATE ION(Non-functional Binders)

SO4.1: 3 residues within 4Å: Chain A: H.185, L.186, A.187 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:L.186, A:A.187 Water bridges: A:R.133, A:G.184

2 x GOL: GLYCEROL(Non-functional Binders)

GOL.2: 6 residues within 4Å: Chain A: H.59, D.102, W.217 Chain B: R.2, T.4, F.12 4 PLIP interactions: 2 interactions with chain A, 2 interactions with chain B Hydrogen bonds: A:S.216, A:S.216, B:R.2, B:R.2 GOL.3: 3 residues within 4Å: Chain B: R.2, F.12, D.14 3 PLIP interactions: 3 interactions with chain B Hydrogen bonds: B:R.2 Water bridges: B:R.2, B:D.14

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Swedberg, J.E. et al., Highly Potent and Selective Plasmin Inhibitors Based on the Sunflower Trypsin Inhibitor-1 Scaffold Attenuate Fibrinolysis in Plasma. J. Med. Chem. (2019)

Release Date

2019-01-23

Peptides

Plasminogen: A
Trypsin inhibitor 1: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
C

Plasminogen

Trypsin inhibitor 1

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