SMTL ID : 6d58.1

Crystal structure of a Fc fragment of Human IgG3

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.39 Å

Oligo State

homo-dimer

Ligands

2 x NAG- NAG- BMA- MAN- NAG- MAN- NAG- FUC: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-2)-alpha-D-mannopyranose-(1-3)-[2-acetamido-2-deoxy-beta-D-glucopyranose-(1-2)-alpha-D-mannopyranose-(1-6)]beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-[alpha-L-fucopyranose-(1-6)]2-acetamido-2-deoxy-beta-D-glucopyranose

NAG-NAG-BMA-MAN-NAG-MAN-NAG-FUC.1: 12 residues within 4Å: Chain A: F.8, F.10, K.13, T.27, V.31, D.32, Q.62, Y.63, N.64, R.68 Ligands: NAG-NAG-BMA-MAN-NAG-MAN-NAG-FUC.2, NAG-NAG-BMA-MAN-NAG-MAN-NAG-FUC.2 3 PLIP interactions: 3 interactions with chain A Hydrophobic interactions: A:Y.63 Hydrogen bonds: A:R.68, A:K.13, A:K.13, A:T.27 NAG-NAG-BMA-MAN-NAG-MAN-NAG-FUC.2: 11 residues within 4Å: Chain B: F.8, F.10, K.13, T.27, V.31, D.32, Q.62, Y.63, N.64, R.68 Ligands: NAG-NAG-BMA-MAN-NAG-MAN-NAG-FUC.1 3 PLIP interactions: 3 interactions with chain B Hydrophobic interactions: B:Q.62, B:Y.63 Hydrogen bonds: B:K.13, B:K.13, B:T.27

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Gohain, N. et al., Crystal structure of a Fc fragment of Human IgG3. To Be Published

Release Date

2019-05-15

Peptides

Immunoglobulin heavy constant gamma 3: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Immunoglobulin heavy constant gamma 3