SMTL ID : 6d7p.1

Crystal Structure of Rat TRPV6*-Y466A

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 3.37 Å

Oligo State

homo-tetramer

Ligands

8 x CA: CALCIUM ION(Non-covalent)(Non-functional Binders)

CA.1: 7 residues within 4Å: Chain A: D.541 Chain B: D.541 Chain C: D.541 Chain D: D.541 Ligands: CA.4, CA.7, CA.10 4 PLIP interactions: 1 interactions with chain C, 1 interactions with chain A, 1 interactions with chain D, 1 interactions with chain B Metal complexes: C:D.541, A:D.541, D:D.541, B:D.541 CA.2: 3 residues within 4Å: Ligands: CA.5, CA.8, CA.11 No protein-ligand interaction detected (PLIP) CA.4: 7 residues within 4Å: Chain A: D.541 Chain B: D.541 Chain C: D.541 Chain D: D.541 Ligands: CA.1, CA.7, CA.10 4 PLIP interactions: 1 interactions with chain C, 1 interactions with chain A, 1 interactions with chain D, 1 interactions with chain B Metal complexes: C:D.541, A:D.541, D:D.541, B:D.541 CA.5: 3 residues within 4Å: Ligands: CA.2, CA.8, CA.11 No protein-ligand interaction detected (PLIP) CA.7: 7 residues within 4Å: Chain A: D.541 Chain B: D.541 Chain C: D.541 Chain D: D.541 Ligands: CA.1, CA.4, CA.10 4 PLIP interactions: 1 interactions with chain C, 1 interactions with chain A, 1 interactions with chain D, 1 interactions with chain B Metal complexes: C:D.541, A:D.541, D:D.541, B:D.541 CA.8: 3 residues within 4Å: Ligands: CA.2, CA.5, CA.11 No protein-ligand interaction detected (PLIP) CA.10: 7 residues within 4Å: Chain A: D.541 Chain B: D.541 Chain C: D.541 Chain D: D.541 Ligands: CA.1, CA.4, CA.7 4 PLIP interactions: 1 interactions with chain C, 1 interactions with chain A, 1 interactions with chain D, 1 interactions with chain B Metal complexes: C:D.541, A:D.541, D:D.541, B:D.541 CA.11: 3 residues within 4Å: Ligands: CA.2, CA.5, CA.8 No protein-ligand interaction detected (PLIP)

4 x DTB: 6-(5-METHYL-2-OXO-IMIDAZOLIDIN-4-YL)-HEXANOIC ACID(Non-covalent)

DTB.3: 11 residues within 4Å: Chain A: R.33, Q.40, M.78, I.85, L.88, Y.115, V.151 Chain D: W.267, Y.269, L.272, E.633 10 PLIP interactions: 5 interactions with chain A, 5 interactions with chain D Hydrophobic interactions: A:Y.115, A:Y.115, D:W.267, D:W.267, D:Y.269, D:Y.269, D:L.272 Hydrogen bonds: A:R.33, A:Q.40 pi-Stacking: A:Y.115 DTB.6: 11 residues within 4Å: Chain B: R.33, Q.40, M.78, I.85, L.88, Y.115, V.151 Chain C: W.267, Y.269, L.272, E.633 10 PLIP interactions: 5 interactions with chain B, 5 interactions with chain C Hydrophobic interactions: B:Y.115, B:Y.115, C:W.267, C:W.267, C:Y.269, C:Y.269, C:L.272 Hydrogen bonds: B:R.33, B:Q.40 pi-Stacking: B:Y.115 DTB.9: 11 residues within 4Å: Chain A: W.267, Y.269, L.272, E.633 Chain C: R.33, Q.40, M.78, I.85, L.88, Y.115, V.151 10 PLIP interactions: 5 interactions with chain A, 5 interactions with chain C Hydrophobic interactions: A:W.267, A:W.267, A:Y.269, A:Y.269, A:L.272, C:Y.115, C:Y.115 Hydrogen bonds: C:R.33, C:Q.40 pi-Stacking: C:Y.115 DTB.12: 11 residues within 4Å: Chain B: W.267, Y.269, L.272, E.633 Chain D: R.33, Q.40, M.78, I.85, L.88, Y.115, V.151 10 PLIP interactions: 5 interactions with chain B, 5 interactions with chain D Hydrophobic interactions: B:W.267, B:W.267, B:Y.269, B:Y.269, B:L.272, D:Y.115, D:Y.115 Hydrogen bonds: D:R.33, D:Q.40 pi-Stacking: D:Y.115

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Singh, A.K. et al., Structural bases of TRP channel TRPV6 allosteric modulation by 2-APB. Nat Commun (2018)

Release Date

2018-07-18

Peptides

Transient receptor potential cation channel subfamily V member 6: ABCD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

C
A

D
A

Membrane

We predict this structure to be a membrane protein.
Show / Hide

Transient receptor potential cation channel subfamily V member 6

Related Entries With Identical Sequence