SMTL ID : 6d7t.1

Cryo-EM structure of human TRPV6-Y467A in complex with 2-Aminoethoxydiphenyl borate (2-APB)

Coordinates

PDB Format Compare

Method

ELECTRON MICROSCOPY

Oligo State

homo-tetramer

Ligands

4 x FZ4: 2-aminoethyl diphenylborinate(Covalent)

FZ4.1: 6 residues within 4Å: Chain A: Q.418, G.422, G.423, H.426, R.470, M.603 No protein-ligand interaction detected (PLIP) FZ4.4: 6 residues within 4Å: Chain B: Q.418, G.422, G.423, H.426, R.470, M.603 No protein-ligand interaction detected (PLIP) FZ4.5: 6 residues within 4Å: Chain C: Q.418, G.422, G.423, H.426, R.470, M.603 No protein-ligand interaction detected (PLIP) FZ4.6: 6 residues within 4Å: Chain D: Q.418, G.422, G.423, H.426, R.470, M.603 No protein-ligand interaction detected (PLIP)

2 x CA: CALCIUM ION(Non-functional Binders)(Non-covalent)

CA.2: 0 residues within 4Å: (No contacts) No protein-ligand interaction detected (PLIP) CA.3: 4 residues within 4Å: Chain A: D.542 Chain B: D.542 Chain C: D.542 Chain D: D.542 4 PLIP interactions: 1 interactions with chain D, 1 interactions with chain B, 1 interactions with chain C, 1 interactions with chain A Metal complexes: D:D.542, B:D.542, C:D.542, A:D.542

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Singh, A.K. et al., Structural bases of TRP channel TRPV6 allosteric modulation by 2-APB. Nat Commun (2018)

Release Date

2018-07-18

Peptides

Transient receptor potential cation channel subfamily V member 6: ABCD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

D
D

Membrane

We predict this structure to be a membrane protein.
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Transient receptor potential cation channel subfamily V member 6

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