SMTL ID : 6d7v.1

Crystal Structure of Rat TRPV6*- in complex with brominated 2-Aminoethoxydiphenyl borate (2-APB-Br)

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 4.30 Å

Oligo State

homo-tetramer

Ligands

4 x FYY: 2-aminoethyl (4-bromophenyl)phenylborinate(Non-covalent)

FYY.1: 10 residues within 4Å: Chain A: V.401, E.402, G.422, F.424, H.425, I.428, N.463, Y.466, R.469, M.602 4 PLIP interactions: 4 interactions with chain A Hydrophobic interactions: A:H.425, A:I.428, A:Y.466 Hydrogen bonds: A:E.402 FYY.3: 10 residues within 4Å: Chain B: V.401, E.402, G.422, F.424, H.425, I.428, N.463, Y.466, R.469, M.602 4 PLIP interactions: 4 interactions with chain B Hydrophobic interactions: B:H.425, B:I.428, B:Y.466 Hydrogen bonds: B:E.402 FYY.5: 10 residues within 4Å: Chain C: V.401, E.402, G.422, F.424, H.425, I.428, N.463, Y.466, R.469, M.602 4 PLIP interactions: 4 interactions with chain C Hydrophobic interactions: C:H.425, C:I.428, C:Y.466 Hydrogen bonds: C:E.402 FYY.7: 10 residues within 4Å: Chain D: V.401, E.402, G.422, F.424, H.425, I.428, N.463, Y.466, R.469, M.602 4 PLIP interactions: 4 interactions with chain D Hydrophobic interactions: D:H.425, D:I.428, D:Y.466 Hydrogen bonds: D:E.402

4 x CA: CALCIUM ION(Non-covalent)

CA.2: 7 residues within 4Å: Chain A: D.541 Chain B: D.541 Chain C: D.541 Chain D: D.541 Ligands: CA.4, CA.6, CA.8 No protein-ligand interaction detected (PLIP) CA.4: 7 residues within 4Å: Chain A: D.541 Chain B: D.541 Chain C: D.541 Chain D: D.541 Ligands: CA.2, CA.6, CA.8 No protein-ligand interaction detected (PLIP) CA.6: 7 residues within 4Å: Chain A: D.541 Chain B: D.541 Chain C: D.541 Chain D: D.541 Ligands: CA.2, CA.4, CA.8 No protein-ligand interaction detected (PLIP) CA.8: 7 residues within 4Å: Chain A: D.541 Chain B: D.541 Chain C: D.541 Chain D: D.541 Ligands: CA.2, CA.4, CA.6 No protein-ligand interaction detected (PLIP)

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Singh, A.K. et al., Structural bases of TRP channel TRPV6 allosteric modulation by 2-APB. Nat Commun (2018)

Release Date

2018-07-18

Peptides

Transient receptor potential cation channel subfamily V member 6: ABCD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

C
A

D
A

Membrane

We predict this structure to be a membrane protein.
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Transient receptor potential cation channel subfamily V member 6

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