SMTL ID : 6d8x.1

PPAR gamma LBD complexed with the agonist GW1929

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.90 Å

Oligo State

monomer

Ligands

1 x EDK: (2~{S})-3-[4-[2-[methyl(pyridin-2-yl)amino]ethoxy]phenyl]-2-[[2-(phenylcarbonyl)phenyl]amino]propanoic acid(Non-covalent)

EDK.1: 19 residues within 4Å: Chain A: I.101, F.102, G.104, C.105, Q.106, S.109, H.143, I.146, Y.147, L.150, I.161, M.168, F.180, F.183, M.184, H.269, L.273, L.289, Y.293 15 PLIP interactions: 15 interactions with chain A Hydrophobic interactions: A:I.101, A:F.102, A:Q.106, A:I.146, A:L.150, A:F.180, A:F.183, A:F.183, A:F.183 Hydrogen bonds: A:S.109, A:H.269, A:Y.293 Salt bridges: A:H.143, A:H.269 pi-Stacking: A:F.102

1 x FLC: CITRATE ANION(Non-covalent)

FLC.2: 1 residues within 4Å: Chain A: K.36 6 PLIP interactions: 6 interactions with chain A Water bridges: A:K.36, A:K.36, A:K.36, A:K.36 Salt bridges: A:K.36, A:K.36

3 x NA: SODIUM ION(Non-functional Binders)

NA.3: 2 residues within 4Å: Chain A: Q.264 Ligands: NA.4 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:Q.264 NA.4: 3 residues within 4Å: Chain A: T.260, Q.264 Ligands: NA.3 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:T.260, A:Q.264 NA.5: 2 residues within 4Å: Chain A: K.277, Y.293 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:K.277, A:K.277

1 x GOL: GLYCEROL(Non-functional Binders)

GOL.6: 8 residues within 4Å: Chain A: F.46, P.47, L.48, R.108, E.115, M.149, L.153, E.163 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:L.48, A:M.149 Water bridges: A:R.108

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Chrisman, I.M. et al., PPAR gamma LBD complexed with the agonist GW1929. To Be Published

Release Date

2019-05-01

Peptides

Peroxisome proliferator-activated receptor gamma: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Peroxisome proliferator-activated receptor gamma

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