SMTL ID : 6dd6.1

Crystal structure of bacterial (6-4) photolyase PhrB from in situ serial Laue diffraction

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.30 Å

Oligo State

monomer

Ligands

1 x FAD: FLAVIN-ADENINE DINUCLEOTIDE(Non-covalent)

FAD.1: 26 residues within 4Å: Chain A: F.249, H.265, S.266, L.267, L.268, S.269, N.273, F.303, Q.306, I.307, W.310, R.311, M.314, Y.363, A.364, H.365, H.366, R.369, L.370, Y.391, D.397, A.398, V.402, E.403, N.406, S.411 23 PLIP interactions: 23 interactions with chain A Hydrophobic interactions: A:R.369, A:L.370, A:Y.391, A:Y.391, A:N.406 Hydrogen bonds: A:S.266, A:S.266, A:S.266, A:L.267, A:L.268, A:S.269, A:S.269, A:N.273, A:H.366, A:R.369, A:D.397, A:N.406, A:N.406 Water bridges: A:Q.253, A:H.366 Salt bridges: A:H.265 pi-Cation interactions: A:R.369, A:R.369

1 x DLZ: 1-deoxy-1-(6,7-dimethyl-2,4-dioxo-3,4-dihydropteridin-8(2H)-yl)-D-ribitol(Non-covalent)

DLZ.2: 19 residues within 4Å: Chain A: L.8, G.9, D.10, C.32, E.33, V.34, E.37, A.38, Y.40, H.43, I.51, F.52, M.55, F.83, P.104, G.105, E.106, R.108, Y.399 10 PLIP interactions: 10 interactions with chain A Hydrophobic interactions: A:I.51 Hydrogen bonds: A:G.9, A:C.32, A:V.34, A:E.37, A:Y.40, A:G.105, A:E.106, A:R.108 Water bridges: A:Q.11

1 x SF4: IRON/SULFUR CLUSTER(Covalent)

SF4.3: 7 residues within 4Å: Chain A: C.350, I.431, Y.437, C.438, C.441, C.454, F.456 4 PLIP interactions: 4 interactions with chain A, Metal complexes: A:C.350, A:C.438, A:C.441, A:C.454

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Ren, Z. et al., Crystal-on-crystal chips for in situ serial diffraction at room temperature. Lab Chip (2018)

Release Date

2018-07-18

Peptides

Photolyase PhrB: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Photolyase PhrB

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