SMTL ID : 6ddh.1

Crystal structure of the double mutant (D52N/R367Q) of NT5C2-537X in the active state, Northeast Structural Genomics Target

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.35 Å

Oligo State

homo-tetramer

Ligands

4 x IMP: INOSINIC ACID(Covalent)

IMP.1: 14 residues within 4Å: Chain A: N.70, M.71, D.72, F.175, R.220, V.223, D.224, H.227, Y.228, K.233, T.267, N.268, S.269, K.310 15 PLIP interactions: 15 interactions with chain A Hydrogen bonds: A:N.70, A:M.71, A:D.72, A:R.220, A:D.224, A:K.233, A:N.268, A:S.269, A:S.269, A:D.369 Water bridges: A:N.176 Salt bridges: A:K.310 pi-Stacking: A:F.175, A:H.227, A:H.227 IMP.2: 14 residues within 4Å: Chain B: N.70, M.71, D.72, F.175, R.220, V.223, D.224, H.227, Y.228, K.233, T.267, N.268, S.269, K.310 15 PLIP interactions: 15 interactions with chain B Hydrogen bonds: B:N.70, B:M.71, B:D.72, B:R.220, B:D.224, B:K.233, B:N.268, B:S.269, B:S.269, B:D.369 Water bridges: B:N.176 Salt bridges: B:K.310 pi-Stacking: B:F.175, B:H.227, B:H.227 IMP.3: 14 residues within 4Å: Chain C: N.70, M.71, D.72, F.175, R.220, V.223, D.224, H.227, Y.228, K.233, T.267, N.268, S.269, K.310 18 PLIP interactions: 18 interactions with chain C Hydrogen bonds: C:N.70, C:M.71, C:D.72, C:R.220, C:D.224, C:D.224, C:H.227, C:K.233, C:T.267, C:N.268, C:S.269, C:S.269, C:D.369 Water bridges: C:N.176 Salt bridges: C:K.310 pi-Stacking: C:F.175, C:H.227, C:H.227 IMP.4: 14 residues within 4Å: Chain D: N.70, M.71, D.72, F.175, R.220, V.223, D.224, H.227, Y.228, K.233, T.267, N.268, S.269, K.310 18 PLIP interactions: 18 interactions with chain D Hydrogen bonds: D:N.70, D:M.71, D:D.72, D:R.220, D:D.224, D:D.224, D:H.227, D:K.233, D:T.267, D:N.268, D:S.269, D:S.269, D:D.369 Water bridges: D:N.176 Salt bridges: D:K.310 pi-Stacking: D:F.175, D:H.227, D:H.227

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Dieck, C.L. et al., Structure and Mechanisms of NT5C2 Mutations Driving Thiopurine Resistance in Relapsed Lymphoblastic Leukemia. Cancer Cell (2018)

Release Date

2018-07-04

Peptides

Cytosolic purine 5'-nucleotidase: ABCD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

C
A

D
A

Cytosolic purine 5'-nucleotidase

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