SMTL ID : 6ddk.1

Crystal structure of the double mutant (D52N/R367Q) of the full-length NT5C2 in the basal state

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.50 Å

Oligo State

homo-tetramer

Ligands

4 x PO4: PHOSPHATE ION(Non-functional Binders)

PO4.1: 6 residues within 4Å: Chain A: R.52, V.53, V.55, Y.489, Y.493, F.495 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:Y.489 Water bridges: A:R.47, A:Y.493, A:R.496 Salt bridges: A:R.52 PO4.2: 6 residues within 4Å: Chain B: R.52, V.53, V.55, Y.489, Y.493, F.495 8 PLIP interactions: 8 interactions with chain B Hydrogen bonds: B:V.53, B:V.53, B:Y.493 Water bridges: B:K.44, B:R.47, B:R.52, B:Y.493 Salt bridges: B:R.52 PO4.3: 6 residues within 4Å: Chain C: R.52, V.53, V.55, Y.489, Y.493, F.495 5 PLIP interactions: 5 interactions with chain C Hydrogen bonds: C:Y.493 Water bridges: C:R.47, C:Y.493, C:R.496 Salt bridges: C:R.52 PO4.4: 6 residues within 4Å: Chain D: R.52, V.53, V.55, Y.489, Y.493, F.495 9 PLIP interactions: 1 interactions with chain B, 8 interactions with chain D Water bridges: B:T.507, D:K.44, D:R.47, D:R.52, D:Y.493 Hydrogen bonds: D:V.53, D:V.53, D:Y.489 Salt bridges: D:R.52

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Dieck, C.L. et al., Structure and Mechanisms of NT5C2 Mutations Driving Thiopurine Resistance in Relapsed Lymphoblastic Leukemia. Cancer Cell (2018)

Release Date

2018-07-04

Peptides

Cytosolic purine 5'-nucleotidase: ABCD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
A

D
B

Cytosolic purine 5'-nucleotidase