SMTL ID : 6ddn.2 (1 other biounit)

The sulfate-binding protein SubI from Mycobacterium tuberculosis H37Rv

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.30 Å

Oligo State

monomer

Ligands

8 x SO4: SULFATE ION(Non-functional Binders)

SO4.1: 12 residues within 4Å: Chain A: Y.59, A.60, G.89, A.90, S.91, S.110, S.175, G.176, S.177, S.217, G.218, Y.236 8 PLIP interactions: 8 interactions with chain A Hydrogen bonds: A:A.60, A:S.91, A:S.110, A:G.176, A:S.177, A:G.218, A:Y.236, A:Y.236 SO4.2: 2 residues within 4Å: Chain A: R.96, R.117 2 PLIP interactions: 2 interactions with chain A Salt bridges: A:R.96, A:R.117 SO4.3: 4 residues within 4Å: Chain A: T.52, H.273, G.275, A.276 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:T.52, A:H.273, A:H.273, A:G.275, A:A.276 SO4.4: 1 residues within 4Å: Chain A: K.152 1 PLIP interactions: 1 interactions with chain A Salt bridges: A:K.152 SO4.5: 6 residues within 4Å: Chain A: D.156, W.157, K.189, P.255, P.256, Q.257 9 PLIP interactions: 9 interactions with chain A Hydrogen bonds: A:D.156, A:D.156, A:W.157, A:W.157, A:Q.257 Water bridges: A:K.189, A:K.189, A:K.189 Salt bridges: A:K.189 SO4.6: 4 residues within 4Å: Chain A: R.194, N.195, N.196, Q.197 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:N.196, A:Q.197 SO4.7: 5 residues within 4Å: Chain A: D.105, T.270, S.271, T.272, H.273 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:T.270, A:T.272 Salt bridges: A:H.273 SO4.8: 3 residues within 4Å: Chain A: V.207, N.208, V.211 No protein-ligand interaction detected (PLIP)

2 x PEG: DI(HYDROXYETHYL)ETHER(Non-functional Binders)

PEG.9: 4 residues within 4Å: Chain A: F.283, T.286, V.287, Q.288 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:V.287, A:Q.288 PEG.10: 1 residues within 4Å: Chain A: A.148 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:V.250

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Meza, A.N. et al., Structural characterization of SubI, a new target for Mycobacterium tuberculosis. To Be Published

Release Date

2019-05-15

Peptides

Probable sulfate-binding lipoprotein SubI: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
B

Probable sulfate-binding lipoprotein SubI

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