SMTL ID : 6ddo.1

Crystal structure of the single mutant (D52N) of the full-length NT5C2 in the basal state

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.48 Å

Oligo State

homo-tetramer

Ligands

8 x PO4: PHOSPHATE ION(Non-functional Binders)

PO4.1: 6 residues within 4Å: Chain A: R.52, V.53, V.55, Y.489, Y.493, F.495 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:Y.489 Water bridges: A:Y.493, A:Y.493, A:Y.493 Salt bridges: A:R.52 PO4.2: 7 residues within 4Å: Chain A: N.70, M.71, D.72, T.267, N.268, S.269, K.310 10 PLIP interactions: 10 interactions with chain A Hydrogen bonds: A:N.70, A:N.70, A:M.71, A:D.72, A:D.72, A:T.267, A:T.267, A:N.268, A:S.269 Salt bridges: A:K.310 PO4.3: 6 residues within 4Å: Chain B: R.52, V.53, V.55, Y.489, Y.493, F.495 5 PLIP interactions: 5 interactions with chain B Hydrogen bonds: B:V.53, B:V.53, B:Y.493 Water bridges: B:R.52 Salt bridges: B:R.52 PO4.4: 7 residues within 4Å: Chain B: N.70, M.71, D.72, T.267, N.268, S.269, K.310 8 PLIP interactions: 8 interactions with chain B Hydrogen bonds: B:N.70, B:M.71, B:D.72, B:T.267, B:T.267, B:N.268, B:S.269 Salt bridges: B:K.310 PO4.5: 6 residues within 4Å: Chain C: R.52, V.53, V.55, Y.489, Y.493, F.495 4 PLIP interactions: 4 interactions with chain C Hydrogen bonds: C:Y.493 Water bridges: C:Y.489, C:Y.493 Salt bridges: C:R.52 PO4.6: 7 residues within 4Å: Chain C: N.70, M.71, D.72, T.267, N.268, S.269, K.310 10 PLIP interactions: 10 interactions with chain C Hydrogen bonds: C:N.70, C:N.70, C:M.71, C:D.72, C:T.267, C:T.267, C:T.267, C:N.268, C:S.269 Salt bridges: C:K.310 PO4.7: 6 residues within 4Å: Chain D: R.52, V.53, V.55, Y.489, Y.493, F.495 5 PLIP interactions: 5 interactions with chain D Hydrogen bonds: D:V.53, D:V.53, D:Y.489 Water bridges: D:R.52 Salt bridges: D:R.52 PO4.8: 7 residues within 4Å: Chain D: N.70, M.71, D.72, T.267, N.268, S.269, K.310 8 PLIP interactions: 8 interactions with chain D Hydrogen bonds: D:N.70, D:M.71, D:D.72, D:D.72, D:T.267, D:N.268, D:S.269 Salt bridges: D:K.310

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Dieck, C.L. et al., Structure and Mechanisms of NT5C2 Mutations Driving Thiopurine Resistance in Relapsed Lymphoblastic Leukemia. Cancer Cell (2018)

Release Date

2018-07-04

Peptides

Cytosolic purine 5'-nucleotidase: ABCD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
A

D
B

Cytosolic purine 5'-nucleotidase

Related Entries With Identical Sequence