SMTL ID : 6ddx.1

Crystal structure of the double mutant (D52N/L375F) of NT5C2-537X in the active state, Northeast Structural Genomics Target

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.90 Å

Oligo State

homo-tetramer

Ligands

4 x PO4: PHOSPHATE ION(Non-functional Binders)

PO4.1: 8 residues within 4Å: Chain A: N.70, M.71, D.72, A.266, T.267, N.268, S.269, K.310 9 PLIP interactions: 9 interactions with chain A Hydrogen bonds: A:N.70, A:M.71, A:D.72, A:T.267, A:T.267, A:T.267, A:N.268, A:S.269 Salt bridges: A:K.310 PO4.2: 8 residues within 4Å: Chain B: N.70, M.71, D.72, A.266, T.267, N.268, S.269, K.310 9 PLIP interactions: 9 interactions with chain B Hydrogen bonds: B:N.70, B:M.71, B:D.72, B:T.267, B:T.267, B:T.267, B:N.268, B:S.269 Salt bridges: B:K.310 PO4.3: 8 residues within 4Å: Chain C: N.70, M.71, D.72, A.266, T.267, N.268, S.269, K.310 9 PLIP interactions: 9 interactions with chain C Hydrogen bonds: C:N.70, C:M.71, C:D.72, C:D.72, C:T.267, C:T.267, C:N.268, C:S.269 Salt bridges: C:K.310 PO4.4: 8 residues within 4Å: Chain D: N.70, M.71, D.72, A.266, T.267, N.268, S.269, K.310 9 PLIP interactions: 9 interactions with chain D Hydrogen bonds: D:N.70, D:M.71, D:D.72, D:D.72, D:T.267, D:T.267, D:N.268, D:S.269 Salt bridges: D:K.310

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Dieck, C.L. et al., Structure and Mechanisms of NT5C2 Mutations Driving Thiopurine Resistance in Relapsed Lymphoblastic Leukemia. Cancer Cell (2018)

Release Date

2018-07-04

Peptides

Cytosolic purine 5'-nucleotidase: ABCD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

C
A

D
A

Cytosolic purine 5'-nucleotidase