SMTL ID : 6ddy.1

Crystal structure of the double mutant (D52N/K359Q) of NT5C2-537X in the active state, Northeast Structural Genomics Target

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.80 Å

Oligo State

homo-tetramer

Ligands

4 x PO4: PHOSPHATE ION(Non-functional Binders)

PO4.1: 7 residues within 4Å: Chain A: N.70, M.71, D.72, T.267, N.268, K.310, D.369 11 PLIP interactions: 11 interactions with chain A Hydrogen bonds: A:N.70, A:M.71, A:D.72, A:T.267, A:T.267, A:N.268, A:S.269, A:S.269 Water bridges: A:D.72, A:H.370 Salt bridges: A:K.310 PO4.3: 7 residues within 4Å: Chain B: N.70, M.71, D.72, T.267, N.268, K.310, D.369 11 PLIP interactions: 11 interactions with chain B Hydrogen bonds: B:N.70, B:M.71, B:D.72, B:T.267, B:T.267, B:N.268, B:S.269, B:S.269 Water bridges: B:D.72, B:H.370 Salt bridges: B:K.310 PO4.5: 7 residues within 4Å: Chain C: N.70, M.71, D.72, T.267, N.268, K.310, D.369 11 PLIP interactions: 11 interactions with chain C Hydrogen bonds: C:N.70, C:M.71, C:D.72, C:D.72, C:T.267, C:N.268, C:S.269, C:S.269 Water bridges: C:D.72, C:D.369 Salt bridges: C:K.310 PO4.7: 7 residues within 4Å: Chain D: N.70, M.71, D.72, T.267, N.268, K.310, D.369 11 PLIP interactions: 11 interactions with chain D Hydrogen bonds: D:N.70, D:M.71, D:D.72, D:D.72, D:T.267, D:N.268, D:S.269, D:S.269 Water bridges: D:D.72, D:D.369 Salt bridges: D:K.310

4 x GOL: GLYCEROL(Non-functional Binders)

GOL.2: 7 residues within 4Å: Chain A: D.270, Y.271, V.306, D.307, G.328, K.329, L.330 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:Y.271, A:L.330 Water bridges: A:K.272, A:D.307, A:D.307 GOL.4: 7 residues within 4Å: Chain B: D.270, Y.271, V.306, D.307, G.328, K.329, L.330 5 PLIP interactions: 5 interactions with chain B Hydrogen bonds: B:Y.271, B:L.330 Water bridges: B:K.272, B:D.307, B:D.307 GOL.6: 7 residues within 4Å: Chain C: D.270, Y.271, V.306, D.307, G.328, K.329, L.330 4 PLIP interactions: 4 interactions with chain C Hydrogen bonds: C:Y.271, C:L.330 Water bridges: C:K.272, C:D.307 GOL.8: 7 residues within 4Å: Chain D: D.270, Y.271, V.306, D.307, G.328, K.329, L.330 4 PLIP interactions: 4 interactions with chain D Hydrogen bonds: D:Y.271, D:L.330 Water bridges: D:K.272, D:D.307

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Dieck, C.L. et al., Structure and Mechanisms of NT5C2 Mutations Driving Thiopurine Resistance in Relapsed Lymphoblastic Leukemia. Cancer Cell (2018)

Release Date

2018-07-04

Peptides

Cytosolic purine 5'-nucleotidase: ABCD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

C
A

D
A

Cytosolic purine 5'-nucleotidase