SMTL ID : 6de0.1

Crystal structure of the single mutant (D52N) of NT5C2-Q523X in the active state

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.05 Å

Oligo State

homo-tetramer

Ligands

16 x PO4: PHOSPHATE ION(Non-functional Binders)

PO4.1: 8 residues within 4Å: Chain A: N.70, M.71, D.72, T.267, N.268, S.269, K.310, H.370 Ligand excluded by PLIP PO4.2: 5 residues within 4Å: Chain A: R.162, L.376, Q.471, R.474, Y.475 Ligand excluded by PLIP PO4.3: 4 residues within 4Å: Chain A: G.148, P.149, R.152, K.158 Ligand excluded by PLIP PO4.4: 4 residues within 4Å: Chain A: N.135, K.158, R.464 Chain C: K.362 Ligand excluded by PLIP PO4.6: 8 residues within 4Å: Chain B: N.70, M.71, D.72, T.267, N.268, S.269, K.310, H.370 Ligand excluded by PLIP PO4.7: 5 residues within 4Å: Chain B: R.162, L.376, Q.471, R.474, Y.475 Ligand excluded by PLIP PO4.8: 4 residues within 4Å: Chain B: G.148, P.149, R.152, K.158 Ligand excluded by PLIP PO4.9: 4 residues within 4Å: Chain B: N.135, K.158, R.464 Chain D: K.362 Ligand excluded by PLIP PO4.11: 8 residues within 4Å: Chain C: N.70, M.71, D.72, T.267, N.268, S.269, K.310, H.370 Ligand excluded by PLIP PO4.12: 5 residues within 4Å: Chain C: R.162, L.376, Q.471, R.474, Y.475 Ligand excluded by PLIP PO4.13: 4 residues within 4Å: Chain C: G.148, P.149, R.152, K.158 Ligand excluded by PLIP PO4.14: 4 residues within 4Å: Chain A: K.362 Chain C: N.135, K.158, R.464 Ligand excluded by PLIP PO4.16: 8 residues within 4Å: Chain D: N.70, M.71, D.72, T.267, N.268, S.269, K.310, H.370 Ligand excluded by PLIP PO4.17: 5 residues within 4Å: Chain D: R.162, L.376, Q.471, R.474, Y.475 Ligand excluded by PLIP PO4.18: 4 residues within 4Å: Chain D: G.148, P.149, R.152, K.158 Ligand excluded by PLIP PO4.19: 4 residues within 4Å: Chain B: K.362 Chain D: N.135, K.158, R.464 Ligand excluded by PLIP

4 x GOL: GLYCEROL(Non-functional Binders)

GOL.5: 6 residues within 4Å: Chain A: D.270, Y.271, V.306, D.307, G.328, L.330 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:Y.271 Water bridges: A:K.272, A:D.307, A:D.307 GOL.10: 6 residues within 4Å: Chain B: D.270, Y.271, V.306, D.307, G.328, L.330 4 PLIP interactions: 4 interactions with chain B Hydrogen bonds: B:Y.271 Water bridges: B:K.272, B:D.307, B:D.307 GOL.15: 6 residues within 4Å: Chain C: D.270, Y.271, V.306, D.307, G.328, L.330 4 PLIP interactions: 4 interactions with chain C Hydrogen bonds: C:Y.271 Water bridges: C:D.270, C:K.272, C:D.307 GOL.20: 6 residues within 4Å: Chain D: D.270, Y.271, V.306, D.307, G.328, L.330 4 PLIP interactions: 4 interactions with chain D Hydrogen bonds: D:Y.271 Water bridges: D:D.270, D:K.272, D:D.307

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Dieck, C.L. et al., Structure and Mechanisms of NT5C2 Mutations Driving Thiopurine Resistance in Relapsed Lymphoblastic Leukemia. Cancer Cell (2018)

Release Date

2018-07-04

Peptides

Cytosolic purine 5'-nucleotidase: ABCD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

C
A

D
A

Cytosolic purine 5'-nucleotidase

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