SMTL ID : 6de5.1

Mycobacterium tuberculosis Rv2671 complexed with beta-NADPH and 6-ethyl-5-{(3S)-3-[2-methoxy-5-(pyridin-4-yl)phenyl]but-1-yn-1-yl}pyrimidine-2,4-diamine

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.30 Å

Oligo State

monomer

Ligands

1 x NDP: NADPH DIHYDRO-NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE(Non-covalent)

NDP.1: 24 residues within 4Å: Chain A: F.45, A.53, T.54, G.57, S.59, G.84, V.85, G.86, T.87, V.120, T.121, R.122, S.123, V.173, E.175, E.193, G.194, G.195, P.196, T.197, L.198, T.201, R.225, I.227 18 PLIP interactions: 18 interactions with chain A Hydrophobic interactions: A:T.87 Hydrogen bonds: A:S.59, A:G.84, A:G.84, A:V.85, A:G.86, A:T.87, A:T.87, A:R.122, A:S.123, A:E.175, A:G.195, A:T.197, A:T.197, A:L.198, A:T.201 Water bridges: A:R.226 Salt bridges: A:R.225

1 x G8J: 6-ethyl-5-{(3S)-3-[2-methoxy-5-(pyridin-4-yl)phenyl]but-1-yn-1-yl}pyrimidine-2,4-diamine(Non-covalent)

G8J.2: 10 residues within 4Å: Chain A: N.44, F.45, I.46, S.59, A.63, D.67, R.68, F.71, E.193, T.214 9 PLIP interactions: 9 interactions with chain A Hydrophobic interactions: A:A.63, A:F.71, A:F.71, A:F.71 Hydrogen bonds: A:N.44, A:N.44, A:N.44, A:T.214 Salt bridges: A:D.67

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Hajian, B. et al., Drugging the Folate Pathway in Mycobacterium tuberculosis: The Role of Multi-targeting Agents. Cell Chem Biol (2019)

Release Date

2018-05-23

Peptides

riboflavin biosynthesis protein RibD: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

riboflavin biosynthesis protein RibD

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