SMTL ID : 6de8.2 (1 other biounit)

Crystal Structure of Bifunctional Enzyme FolD-Methylenetetrahydrofolate Dehydrogenase/Cyclohydrolase from Campylobacter jejuni

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.10 Å

Oligo State

homo-tetramer

Ligands

34 x IOD: IODIDE ION(Non-functional Binders)

IOD.1: 2 residues within 4Å: Chain A: H.191, I.192 Ligand excluded by PLIP IOD.2: 2 residues within 4Å: Chain A: P.261, G.262 Ligand excluded by PLIP IOD.3: 2 residues within 4Å: Chain A: N.170, I.171 Ligand excluded by PLIP IOD.4: 3 residues within 4Å: Chain A: P.100, L.101, K.107 Ligand excluded by PLIP IOD.5: 3 residues within 4Å: Chain A: K.23, K.281 Chain D: N.73 Ligand excluded by PLIP IOD.6: 0 residues within 4Å: (No contacts) Ligand excluded by PLIP IOD.7: 3 residues within 4Å: Chain A: K.10, G.262 Ligands: GOL.10 Ligand excluded by PLIP IOD.8: 0 residues within 4Å: (No contacts) Ligand excluded by PLIP IOD.9: 1 residues within 4Å: Chain A: K.52 Ligand excluded by PLIP IOD.11: 0 residues within 4Å: (No contacts) Ligand excluded by PLIP IOD.12: 2 residues within 4Å: Chain B: K.52, H.69 Ligand excluded by PLIP IOD.13: 3 residues within 4Å: Chain B: K.10, G.262, P.266 Ligand excluded by PLIP IOD.14: 2 residues within 4Å: Chain B: L.99 Ligands: IOD.18 Ligand excluded by PLIP IOD.15: 3 residues within 4Å: Chain B: K.107, N.170, I.171 Ligand excluded by PLIP IOD.16: 1 residues within 4Å: Chain B: P.261 Ligand excluded by PLIP IOD.17: 4 residues within 4Å: Chain B: H.191, I.192, A.211 Ligands: K.21 Ligand excluded by PLIP IOD.18: 3 residues within 4Å: Chain B: P.100, L.101 Ligands: IOD.14 Ligand excluded by PLIP IOD.22: 2 residues within 4Å: Chain C: H.191, I.192 Ligand excluded by PLIP IOD.23: 2 residues within 4Å: Chain C: P.261, G.262 Ligand excluded by PLIP IOD.24: 2 residues within 4Å: Chain C: N.170, I.171 Ligand excluded by PLIP IOD.25: 3 residues within 4Å: Chain C: P.100, L.101, K.107 Ligand excluded by PLIP IOD.26: 3 residues within 4Å: Chain B: N.73 Chain C: K.23, K.281 Ligand excluded by PLIP IOD.27: 0 residues within 4Å: (No contacts) Ligand excluded by PLIP IOD.28: 3 residues within 4Å: Chain C: K.10, G.262 Ligands: GOL.31 Ligand excluded by PLIP IOD.29: 0 residues within 4Å: (No contacts) Ligand excluded by PLIP IOD.30: 1 residues within 4Å: Chain C: K.52 Ligand excluded by PLIP IOD.32: 0 residues within 4Å: (No contacts) Ligand excluded by PLIP IOD.33: 2 residues within 4Å: Chain D: K.52, H.69 Ligand excluded by PLIP IOD.34: 3 residues within 4Å: Chain D: K.10, G.262, P.266 Ligand excluded by PLIP IOD.35: 2 residues within 4Å: Chain D: L.99 Ligands: IOD.39 Ligand excluded by PLIP IOD.36: 3 residues within 4Å: Chain D: K.107, N.170, I.171 Ligand excluded by PLIP IOD.37: 1 residues within 4Å: Chain D: P.261 Ligand excluded by PLIP IOD.38: 4 residues within 4Å: Chain D: H.191, I.192, A.211 Ligands: K.42 Ligand excluded by PLIP IOD.39: 3 residues within 4Å: Chain D: P.100, L.101 Ligands: IOD.35 Ligand excluded by PLIP

4 x GOL: GLYCEROL(Non-functional Binders)

GOL.10: 5 residues within 4Å: Chain A: S.13, K.17, P.266, I.269 Ligands: IOD.7 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:S.13, A:K.17, A:P.266 GOL.19: 6 residues within 4Å: Chain B: S.117, F.139, K.278, S.279, N.282, R.283 3 PLIP interactions: 3 interactions with chain B Hydrogen bonds: B:K.278, B:S.279, B:N.282 GOL.31: 5 residues within 4Å: Chain C: S.13, K.17, P.266, I.269 Ligands: IOD.28 3 PLIP interactions: 3 interactions with chain C Hydrogen bonds: C:S.13, C:K.17, C:P.266 GOL.40: 6 residues within 4Å: Chain D: S.117, F.139, K.278, S.279, N.282, R.283 3 PLIP interactions: 3 interactions with chain D Hydrogen bonds: D:K.278, D:S.279, D:N.282

2 x CL: CHLORIDE ION(Non-functional Binders)

CL.20: 4 residues within 4Å: Chain B: L.70, N.71, I.74 Chain C: F.26 Ligand excluded by PLIP CL.41: 4 residues within 4Å: Chain A: F.26 Chain D: L.70, N.71, I.74 Ligand excluded by PLIP

2 x K: POTASSIUM ION(Non-covalent)

K.21: 3 residues within 4Å: Chain B: H.191, I.192 Ligands: IOD.17 No protein-ligand interaction detected (PLIP) K.42: 3 residues within 4Å: Chain D: H.191, I.192 Ligands: IOD.38 No protein-ligand interaction detected (PLIP)

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Kim, Y. et al., Crystal Structure of Bifunctional Enzyme FolD-Methylenetetrahydrofolate Dehydrogenase/Cyclohydrolase from Campylobacter jejuni. To Be Published

Release Date

2018-05-30

Peptides

Bifunctional protein FolD: ABCD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
A

D
B

Bifunctional protein FolD

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