SMTL ID : 6dgf.1

Ubiquitin Variant bound to USP2

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.34 Å

Oligo State

hetero-1-1-mer

Ligands

1 x ZN: ZINC ION(Non-covalent)

ZN.1: 4 residues within 4Å: Chain A: C.190, C.193, C.241, C.244 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:C.190, A:C.193, A:C.241, A:C.244

2 x SO4: SULFATE ION(Non-functional Binders)

SO4.2: 5 residues within 4Å: Chain A: A.75, H.76, T.77, A.78, R.110 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:T.77, A:A.78 Salt bridges: A:H.76, A:R.110 SO4.3: 4 residues within 4Å: Chain A: D.234, G.235, K.238, R.249 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:G.235 Salt bridges: A:K.238, A:R.249

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Pascoe, N. et al., Yeast Two-Hybrid Analysis for Ubiquitin Variant Inhibitors of Human Deubiquitinases. J. Mol. Biol. (2019)

Release Date

2019-02-13

Peptides

Ubiquitin carboxyl-terminal hydrolase 2: A
Polyubiquitin-B: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Ubiquitin carboxyl-terminal hydrolase 2

Polyubiquitin-B