SMTL ID : 6dgs.1

Crystal Structure of Leishmania major dihydroorotate dehydrogenase mutant Y142A

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.75 Å

Oligo State

homo-dimer

Ligands

2 x FMN: FLAVIN MONONUCLEOTIDE(Non-covalent)

FMN.1: 24 residues within 4Å: Chain A: A.53, A.54, G.55, V.56, K.78, S.79, Y.93, S.100, N.102, M.104, N.162, K.199, I.228, N.229, S.230, G.256, G.257, V.260, C.283, G.284, G.285, V.305, G.306, T.307 26 PLIP interactions: 26 interactions with chain A Hydrophobic interactions: A:V.56, A:Y.93, A:Y.93 Hydrogen bonds: A:A.54, A:S.79, A:S.79, A:S.79, A:N.162, A:K.199, A:K.199, A:N.229, A:G.257, A:G.284, A:G.285, A:G.306, A:T.307 Water bridges: A:A.54, A:K.78, A:K.78, A:K.78, A:K.78, A:K.78, A:G.284, A:V.286, A:V.286, A:V.286 FMN.4: 24 residues within 4Å: Chain B: A.53, A.54, G.55, V.56, K.78, S.79, Y.93, S.100, N.102, M.104, N.162, K.199, I.228, N.229, S.230, G.256, G.257, V.260, C.283, G.284, G.285, V.305, G.306, T.307 25 PLIP interactions: 25 interactions with chain B Hydrophobic interactions: B:V.56, B:Y.93, B:Y.93 Hydrogen bonds: B:A.54, B:S.79, B:S.79, B:S.79, B:N.162, B:K.199, B:K.199, B:N.229, B:G.257, B:G.284, B:G.285, B:G.306, B:T.307, B:T.307 Water bridges: B:A.54, B:K.78, B:K.78, B:K.78, B:G.284, B:V.286, B:V.286, B:V.286

2 x GOL: GLYCEROL(Non-functional Binders)

GOL.2: 6 residues within 4Å: Chain A: V.236, I.237 Chain B: L.261, L.265, L.294 Ligands: SO4.3 3 PLIP interactions: 2 interactions with chain B, 1 interactions with chain A Water bridges: B:R.258, B:D.291 Hydrogen bonds: A:I.237 GOL.5: 7 residues within 4Å: Chain A: L.261, L.265, L.294 Chain B: V.236, I.237, Y.259 Ligands: SO4.6 4 PLIP interactions: 3 interactions with chain B, 1 interactions with chain A Hydrogen bonds: B:I.237 Water bridges: B:Y.259, B:Y.259, A:D.291

2 x SO4: SULFATE ION(Non-functional Binders)

SO4.3: 7 residues within 4Å: Chain A: L.96, P.97, V.236, I.237, D.238, V.245 Ligands: GOL.2 2 PLIP interactions: 2 interactions with chain A Water bridges: A:A.239, A:E.240 SO4.6: 5 residues within 4Å: Chain B: L.96, P.97, D.238, V.245 Ligands: GOL.5 1 PLIP interactions: 1 interactions with chain B Hydrogen bonds: B:I.237

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Reis, R.A.G. et al., Crystal Structure of Leishmania major dihydroorotate dehydrogenase mutant Y142A. To Be Published

Release Date

2019-05-29

Peptides

Dihydroorotate dehydrogenase (fumarate): AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Dihydroorotate dehydrogenase (fumarate)