SMTL ID : 6djw.1

Crystal Structure of pParkin (REP and RING2 deleted)-pUb-UbcH7 complex

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 3.80 Å

Oligo State

hetero-1-1-1-mer

Ligands

6 x ZN: ZINC ION(Non-covalent)

ZN.1: 4 residues within 4Å: Chain A: C.129, C.132, C.159, C.166 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:C.129, A:C.132, A:C.159, A:C.166 ZN.2: 4 residues within 4Å: Chain A: C.114, C.117, C.183, H.186 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:C.114, A:C.117, A:C.183, A:H.186 ZN.3: 5 residues within 4Å: Chain A: C.210, A.212, C.213, C.232, C.235 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:C.210, A:C.213, A:C.232, A:C.235 ZN.4: 4 residues within 4Å: Chain A: C.225, H.229, C.261, C.265 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:C.225, A:H.229, A:C.261, A:C.265 ZN.5: 4 residues within 4Å: Chain A: C.333, C.336, H.341, C.345 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:C.333, A:C.336, A:H.341, A:C.345 ZN.6: 4 residues within 4Å: Chain A: C.304, C.309, C.324, C.328 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:C.304, A:C.309, A:C.324, A:C.328

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Sauve, V. et al., Mechanism of parkin activation by phosphorylation. Nat. Struct. Mol. Biol. (2018)

Release Date

2018-07-04

Peptides

RBR-type E3 ubiquitin transferase,RBR-type E3 ubiquitin transferase: A
Ubiquitin: B
Ubiquitin-conjugating enzyme E2 L3: C

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

RBR-type E3 ubiquitin transferase,RBR-type E3 ubiquitin transferase

Ubiquitin

Ubiquitin-conjugating enzyme E2 L3

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