SMTL ID : 6dl2.1

BRD4 bromodomain 1 in complex with HYB157

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.47 Å

Oligo State

monomer

Ligands

1 x GUJ: 3-benzyl-2,9-dimethyl-4H,6H-thieno[2,3-e][1,2,4]triazolo[3,4-c][1,4]oxazepine(Non-covalent)

GUJ.1: 11 residues within 4Å: Chain A: W.41, P.42, F.43, V.47, L.52, L.54, Y.57, Y.99, N.100, I.106, M.109 8 PLIP interactions: 8 interactions with chain A Hydrophobic interactions: A:W.41, A:W.41, A:W.41, A:F.43, A:V.47, A:L.52, A:I.106 Hydrogen bonds: A:N.100

1 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.2: 5 residues within 4Å: Chain A: I.60, I.61, K.62, T.63, N.95 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:I.60, A:K.62, A:T.63, A:T.63, A:N.95

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Qin, C. et al., Discovery of QCA570 as an Exceptionally Potent and Efficacious Proteolysis Targeting Chimera (PROTAC) Degrader of the Bromodomain and Extra-Terminal (BET) Proteins Capable of Inducing Complete and Durable Tumor Regression. J. Med. Chem. (2018)

Release Date

2019-04-17

Peptides

Bromodomain-containing protein 4: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Bromodomain-containing protein 4