SMTL ID : 6dlf.1

Crystal structure of NTRI homodimer

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 3.45 Å

Oligo State

homo-dimer

Ligands

1 x NAG- NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG-NAG.1: 5 residues within 4Å: Chain B: N.48, R.49, R.65, Y.86, D.87 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:R.49, B:R.49

4 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG.2: 5 residues within 4Å: Chain A: N.48, R.49, R.65, Y.86, D.87 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:R.65, A:R.65, A:Y.86, A:D.87, A:Y.91 NAG.3: 2 residues within 4Å: Chain A: N.130, Q.167 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:Q.167 NAG.4: 2 residues within 4Å: Chain A: N.22, I.109 No protein-ligand interaction detected (PLIP) NAG.5: 2 residues within 4Å: Chain B: N.130, Q.167 1 PLIP interactions: 1 interactions with chain B Hydrogen bonds: B:Q.167

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Ranaivoson, F.M. et al., Structure of a heterodimer of neuronal cell surface proteins. Structure (2019)

Release Date

2019-04-10

Peptides

Neurotrimin: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Neurotrimin