SMTL ID : 6dlw.1

Complement component polyC9

Coordinates

PDB Format Compare

Method

ELECTRON MICROSCOPY

Oligo State

homo-22-mer

Ligands

22 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG.1: 2 residues within 4Å: Chain A: G.495, T.497 Ligand excluded by PLIP NAG.3: 2 residues within 4Å: Chain B: G.495, T.497 Ligand excluded by PLIP NAG.5: 2 residues within 4Å: Chain C: G.495, T.497 Ligand excluded by PLIP NAG.7: 2 residues within 4Å: Chain D: G.495, T.497 Ligand excluded by PLIP NAG.9: 2 residues within 4Å: Chain E: G.495, T.497 Ligand excluded by PLIP NAG.11: 2 residues within 4Å: Chain F: G.495, T.497 Ligand excluded by PLIP NAG.13: 2 residues within 4Å: Chain G: G.495, T.497 Ligand excluded by PLIP NAG.15: 2 residues within 4Å: Chain H: G.495, T.497 Ligand excluded by PLIP NAG.17: 2 residues within 4Å: Chain I: G.495, T.497 Ligand excluded by PLIP NAG.19: 2 residues within 4Å: Chain J: G.495, T.497 Ligand excluded by PLIP NAG.21: 2 residues within 4Å: Chain K: G.495, T.497 Ligand excluded by PLIP NAG.23: 2 residues within 4Å: Chain L: G.495, T.497 Ligand excluded by PLIP NAG.25: 2 residues within 4Å: Chain M: G.495, T.497 Ligand excluded by PLIP NAG.27: 2 residues within 4Å: Chain N: G.495, T.497 Ligand excluded by PLIP NAG.29: 2 residues within 4Å: Chain O: G.495, T.497 Ligand excluded by PLIP NAG.31: 2 residues within 4Å: Chain P: G.495, T.497 Ligand excluded by PLIP NAG.33: 2 residues within 4Å: Chain Q: G.495, T.497 Ligand excluded by PLIP NAG.35: 2 residues within 4Å: Chain R: G.495, T.497 Ligand excluded by PLIP NAG.37: 2 residues within 4Å: Chain S: G.495, T.497 Ligand excluded by PLIP NAG.39: 2 residues within 4Å: Chain T: G.495, T.497 Ligand excluded by PLIP NAG.41: 2 residues within 4Å: Chain U: G.495, T.497 Ligand excluded by PLIP NAG.43: 2 residues within 4Å: Chain V: G.495, T.497 Ligand excluded by PLIP

22 x BMA: beta-D-mannopyranose(Post Translational Modification)

BMA.2: 3 residues within 4Å: Chain A: P.26, W.27, R.42 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:W.27 BMA.4: 3 residues within 4Å: Chain B: P.26, W.27, R.42 1 PLIP interactions: 1 interactions with chain B Hydrogen bonds: B:W.27 BMA.6: 3 residues within 4Å: Chain C: P.26, W.27, R.42 1 PLIP interactions: 1 interactions with chain C Hydrogen bonds: C:W.27 BMA.8: 3 residues within 4Å: Chain D: P.26, W.27, R.42 1 PLIP interactions: 1 interactions with chain D Hydrogen bonds: D:W.27 BMA.10: 3 residues within 4Å: Chain E: P.26, W.27, R.42 1 PLIP interactions: 1 interactions with chain E Hydrogen bonds: E:W.27 BMA.12: 3 residues within 4Å: Chain F: P.26, W.27, R.42 1 PLIP interactions: 1 interactions with chain F Hydrogen bonds: F:W.27 BMA.14: 3 residues within 4Å: Chain G: P.26, W.27, R.42 1 PLIP interactions: 1 interactions with chain G Hydrogen bonds: G:W.27 BMA.16: 3 residues within 4Å: Chain H: P.26, W.27, R.42 1 PLIP interactions: 1 interactions with chain H Hydrogen bonds: H:W.27 BMA.18: 3 residues within 4Å: Chain I: P.26, W.27, R.42 1 PLIP interactions: 1 interactions with chain I Hydrogen bonds: I:W.27 BMA.20: 3 residues within 4Å: Chain J: P.26, W.27, R.42 1 PLIP interactions: 1 interactions with chain J Hydrogen bonds: J:W.27 BMA.22: 3 residues within 4Å: Chain K: P.26, W.27, R.42 1 PLIP interactions: 1 interactions with chain K Hydrogen bonds: K:W.27 BMA.24: 3 residues within 4Å: Chain L: P.26, W.27, R.42 1 PLIP interactions: 1 interactions with chain L Hydrogen bonds: L:W.27 BMA.26: 3 residues within 4Å: Chain M: P.26, W.27, R.42 1 PLIP interactions: 1 interactions with chain M Hydrogen bonds: M:W.27 BMA.28: 3 residues within 4Å: Chain N: P.26, W.27, R.42 1 PLIP interactions: 1 interactions with chain N Hydrogen bonds: N:W.27 BMA.30: 3 residues within 4Å: Chain O: P.26, W.27, R.42 1 PLIP interactions: 1 interactions with chain O Hydrogen bonds: O:W.27 BMA.32: 3 residues within 4Å: Chain P: P.26, W.27, R.42 1 PLIP interactions: 1 interactions with chain P Hydrogen bonds: P:W.27 BMA.34: 3 residues within 4Å: Chain Q: P.26, W.27, R.42 1 PLIP interactions: 1 interactions with chain Q Hydrogen bonds: Q:W.27 BMA.36: 3 residues within 4Å: Chain R: P.26, W.27, R.42 1 PLIP interactions: 1 interactions with chain R Hydrogen bonds: R:W.27 BMA.38: 3 residues within 4Å: Chain S: P.26, W.27, R.42 1 PLIP interactions: 1 interactions with chain S Hydrogen bonds: S:W.27 BMA.40: 3 residues within 4Å: Chain T: P.26, W.27, R.42 1 PLIP interactions: 1 interactions with chain T Hydrogen bonds: T:W.27 BMA.42: 3 residues within 4Å: Chain U: P.26, W.27, R.42 1 PLIP interactions: 1 interactions with chain U Hydrogen bonds: U:W.27 BMA.44: 3 residues within 4Å: Chain V: P.26, W.27, R.42 1 PLIP interactions: 1 interactions with chain V Hydrogen bonds: V:W.27

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Spicer, B.A. et al., The first transmembrane region of complement component-9 acts as a brake on its self-assembly. Nat Commun (2018)

Release Date

2018-09-12

Peptides

Complement component C9: ABCDEFGHIJKLMNOPQRSTUV

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

D
D

E
E

F
F

G
G

H
H

I
I

J
J

K
K

L
L

M
M

N
N

O
O

P
P

Q
Q

R
R

S
S

T
T

U
U

V
V

Complement component C9

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