SMTL ID : 6dmb.1

Cryo-EM structure of human Ptch1

Coordinates

PDB Format

Method

ELECTRON MICROSCOPY

Oligo State

monomer

Ligands

1 x NAG- NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG-NAG.1: 1 residues within 4Å: Chain A: N.1021 No protein-ligand interaction detected (PLIP)

5 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG.2: 2 residues within 4Å: Chain A: K.332, N.333 1 PLIP interactions: 1 interactions with chain A Hydrophobic interactions: A:K.332 NAG.3: 3 residues within 4Å: Chain A: N.370, S.371, V.376 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:N.370, A:N.370 NAG.4: 1 residues within 4Å: Chain A: N.435 No protein-ligand interaction detected (PLIP) NAG.5: 1 residues within 4Å: Chain A: N.896 No protein-ligand interaction detected (PLIP) NAG.6: 1 residues within 4Å: Chain A: N.162 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:N.162

2 x Y01: CHOLESTEROL HEMISUCCINATE(Non-covalent)

Y01.7: 14 residues within 4Å: Chain A: M.237, I.241, L.244, Y.245, P.246, W.277, F.280, P.282, M.302, L.303, Y.355, M.356, A.957, Q.959 9 PLIP interactions: 9 interactions with chain A Hydrophobic interactions: A:I.241, A:L.244, A:Y.245, A:W.277, A:F.280, A:F.280, A:P.282, A:L.303, A:L.303 Y01.8: 9 residues within 4Å: Chain A: L.137, A.140, L.142, V.458, V.463, Y.467, A.499, F.516, T.521 7 PLIP interactions: 7 interactions with chain A Hydrophobic interactions: A:L.137, A:A.140, A:L.142, A:V.463, A:F.516, A:T.521 Salt bridges: A:K.453

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Gong, X. et al., Structural basis for the recognition of Sonic Hedgehog by human Patched1. Science (2018)

Release Date

2018-07-11

Peptides

Protein patched homolog 1: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Membrane

We predict this structure to be a membrane protein.
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Protein patched homolog 1

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