SMTL ID : 6dmk.1

A multiconformer ligand model of an isoxazolyl-benzimidazole ligand bound to the bromodomain of human CREBBP

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.66 Å

Oligo State

monomer

Ligands

1 x NO3: NITRATE ION(Non-functional Binders)

NO3.1: 4 residues within 4Å: Chain A: L.27, P.28, R.91 Ligands: 2LL.2 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:R.91, A:R.91

1 x 2LL: 5-(3,5-dimethyl-1,2-oxazol-4-yl)-1-[2-(morpholin-4-yl)ethyl]-2-(2-phenylethyl)-1H-benzimidazole(Non-covalent)

2LL.2: 16 residues within 4Å: Chain A: L.27, P.28, F.29, Q.31, V.33, L.37, L.38, I.40, Y.43, A.82, Y.85, N.86, R.91, V.92 Ligands: NO3.1, EDO.3 7 PLIP interactions: 7 interactions with chain A Hydrophobic interactions: A:P.28, A:F.29, A:V.33, A:L.38, A:L.38, A:I.40 Hydrogen bonds: A:N.86

1 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.3: 3 residues within 4Å: Chain A: L.37, L.38 Ligands: 2LL.2 No protein-ligand interaction detected (PLIP)

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

van Zundert, G.C.P. et al., qFit-ligand Reveals Widespread Conformational Heterogeneity of Drug-Like Molecules in X-Ray Electron Density Maps. J. Med. Chem. (2018)

Release Date

2018-12-19

Peptides

CREB-binding protein: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

CREB-binding protein