SMTL ID : 6dms.1

Endo-fucoidan hydrolase MfFcnA4_H294Q from glycoside hydrolase family 107

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.85 Å

Oligo State

monomer

Ligands

2 x CA: CALCIUM ION(Non-covalent)

CA.1: 6 residues within 4Å: Chain A: F.327, R.328, D.330, R.332, N.335, D.336 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:F.327, A:D.330, A:R.332, A:D.336 CA.2: 5 residues within 4Å: Chain A: G.528, D.560, E.562, D.564, D.609 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:G.528, A:E.562, A:D.564, A:D.609

1 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.3: 4 residues within 4Å: Chain A: L.51, D.226, F.343, W.351 No protein-ligand interaction detected (PLIP)

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Vickers, C. et al., Endo-fucoidan hydrolases from glycoside hydrolase family 107 (GH107) display structural and mechanistic similarities to alpha-l-fucosidases from GH29. J. Biol. Chem. (2018)

Release Date

2018-10-03

Peptides

Alpha-1,4-endofucoidanase: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Alpha-1,4-endofucoidanase