- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.66 Å
- Oligo State
- homo-dimer
- Ligands
- 2 x NAD: NICOTINAMIDE-ADENINE-DINUCLEOTIDE(Non-covalent)
- 2 x EPZ: (2R)-2-{[(2R,3R,4R,5S,6R)-3-(acetylamino)-2-{[(S)-{[(R)-{[(2R,3S,4R,5R)-5-(2,4-dioxo-3,4-dihydropyrimidin-1(2H)-yl)-3,4-dihydroxytetrahydrofuran-2-yl]methoxy}(hydroxy)phosphoryl]oxy}(hydroxy)phosphoryl]oxy}-5-hydroxy-6-(hydroxymethyl)tetrahydro-2H-pyran-4-yl]oxy}propanoic acid(Non-covalent)
EPZ.2: 22 residues within 4Å:- Chain A: A.113, S.153, S.154, A.155, Y.177, Y.204, F.205, N.206, Q.212, Y.218, A.220, V.221, K.224, V.236, I.237, Y.238, Q.243, R.245, I.279, R.302, D.305
- Ligands: NAD.1
27 PLIP interactions:27 interactions with chain A- Hydrophobic interactions: A:A.220, A:V.221, A:K.224, A:Y.238
- Hydrogen bonds: A:S.153, A:S.153, A:S.154, A:Y.177, A:N.206, A:Q.212, A:V.221, A:K.224, A:V.236, A:Y.238, A:Q.243, A:R.302
- Water bridges: A:V.207, A:Y.218, A:R.245, A:R.245, A:R.245, A:R.302, A:R.302, A:D.305, A:D.305
- Salt bridges: A:R.245, A:R.302
EPZ.9: 22 residues within 4Å:- Chain B: A.113, S.153, S.154, A.155, Y.177, Y.204, F.205, N.206, Q.212, Y.218, A.220, V.221, K.224, V.236, I.237, Y.238, Q.243, R.245, I.279, R.302, D.305
- Ligands: NAD.8
25 PLIP interactions:25 interactions with chain B- Hydrophobic interactions: B:A.220, B:V.221, B:K.224, B:Y.238
- Hydrogen bonds: B:S.153, B:S.153, B:S.154, B:N.206, B:Q.212, B:V.221, B:K.224, B:V.236, B:Y.238, B:Q.243, B:R.302
- Water bridges: B:V.207, B:Y.218, B:R.245, B:R.245, B:R.245, B:R.245, B:R.302, B:R.302
- Salt bridges: B:R.245, B:R.302
- 2 x ZN: ZINC ION(Non-covalent)
- 8 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)
EDO.4: 5 residues within 4Å:- Chain A: S.70, L.112, A.113, S.114, Y.125
5 PLIP interactions:5 interactions with chain A- Hydrogen bonds: A:S.70, A:S.70, A:Y.125
- Water bridges: A:A.113, A:R.124
EDO.5: 6 residues within 4Å:- Chain A: N.280, F.283, E.284, D.295, V.296, Y.298
2 PLIP interactions:2 interactions with chain A- Hydrogen bonds: A:E.284, A:D.295
EDO.6: 2 residues within 4Å:- Chain A: E.301, K.307
1 PLIP interactions:1 interactions with chain A- Water bridges: A:E.301
EDO.7: 2 residues within 4Å:- Chain A: D.90, D.93
1 PLIP interactions:1 interactions with chain A- Hydrogen bonds: A:D.90
EDO.11: 5 residues within 4Å:- Chain B: S.70, L.112, A.113, S.114, Y.125
5 PLIP interactions:5 interactions with chain B- Hydrogen bonds: B:S.70, B:S.70, B:Y.125
- Water bridges: B:A.113, B:R.124
EDO.12: 6 residues within 4Å:- Chain B: N.280, F.283, E.284, D.295, V.296, Y.298
3 PLIP interactions:3 interactions with chain B- Hydrogen bonds: B:E.284, B:E.284, B:D.295
EDO.13: 2 residues within 4Å:- Chain B: E.301, K.307
1 PLIP interactions:1 interactions with chain B- Water bridges: B:E.301
EDO.14: 2 residues within 4Å:- Chain B: D.90, D.93
1 PLIP interactions:1 interactions with chain B- Hydrogen bonds: B:D.90
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Carbone, V. et al., Structural determination of archaeal UDP-N-acetylglucosamine 4-epimerase from Methanobrevibacter ruminantium M1 in complex with the bacterial cell wall intermediate UDP-N-acetylmuramic acid. Proteins (2018)
- Release Date
- 2018-10-03
- Peptides
- NAD-dependent epimerase/dehydratase: AB
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
A
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.66 Å
- Oligo State
- homo-dimer
- Ligands
- 2 x NAD: NICOTINAMIDE-ADENINE-DINUCLEOTIDE(Non-covalent)
- 2 x EPZ: (2R)-2-{[(2R,3R,4R,5S,6R)-3-(acetylamino)-2-{[(S)-{[(R)-{[(2R,3S,4R,5R)-5-(2,4-dioxo-3,4-dihydropyrimidin-1(2H)-yl)-3,4-dihydroxytetrahydrofuran-2-yl]methoxy}(hydroxy)phosphoryl]oxy}(hydroxy)phosphoryl]oxy}-5-hydroxy-6-(hydroxymethyl)tetrahydro-2H-pyran-4-yl]oxy}propanoic acid(Non-covalent)
- 2 x ZN: ZINC ION(Non-covalent)
- 8 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Carbone, V. et al., Structural determination of archaeal UDP-N-acetylglucosamine 4-epimerase from Methanobrevibacter ruminantium M1 in complex with the bacterial cell wall intermediate UDP-N-acetylmuramic acid. Proteins (2018)
- Release Date
- 2018-10-03
- Peptides
- NAD-dependent epimerase/dehydratase: AB
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
A