SMTL ID : 6dnz.1

Trypanosoma brucei PRMT1 enzyme-prozyme heterotetrameric complex with AdoHcy

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.38 Å

Oligo State

hetero-2-2-mer

Ligands

2 x SAH: S-ADENOSYL-L-HOMOCYSTEINE(Non-covalent)

SAH.1: 24 residues within 4Å: Chain A: Y.22, H.28, M.31, L.32, R.37, D.59, G.61, C.62, G.63, T.64, I.66, L.67, V.82, D.83, C.84, S.85, V.87, G.109, K.110, V.111, E.112, E.126, M.137, T.140 7 PLIP interactions: 7 interactions with chain A Hydrogen bonds: A:G.61, A:C.84, A:S.85, A:V.111, A:E.112 Water bridges: A:E.126 Salt bridges: A:R.37 SAH.4: 24 residues within 4Å: Chain C: Y.22, H.28, M.31, L.32, R.37, D.59, G.61, C.62, G.63, T.64, I.66, L.67, V.82, D.83, C.84, S.85, V.87, G.109, K.110, V.111, E.112, E.126, M.137, T.140 11 PLIP interactions: 11 interactions with chain C Hydrogen bonds: C:G.61, C:T.64, C:C.84, C:S.85, C:S.85, C:V.111, C:E.112 Water bridges: C:L.67, C:E.126, C:T.140 Salt bridges: C:R.37

2 x TRS: 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL(Non-functional Binders)

TRS.2: 12 residues within 4Å: Chain A: I.167, D.169, Q.171, Y.172, L.200, D.202, T.203, V.204, E.205, Q.208, V.290, Y.292 6 PLIP interactions: 6 interactions with chain A Hydrogen bonds: A:Q.171, A:D.202, A:T.203, A:Q.208, A:Y.292, A:Y.292 TRS.5: 12 residues within 4Å: Chain C: I.167, D.169, Q.171, Y.172, L.200, D.202, T.203, V.204, E.205, Q.208, V.290, Y.292 3 PLIP interactions: 3 interactions with chain C Hydrogen bonds: C:Q.171, C:D.202, C:Q.208

2 x GOL: GLYCEROL(Non-functional Binders)

GOL.3: 12 residues within 4Å: Chain B: C.80, R.86, Y.90, H.104, L.105, G.106, C.107, V.112, I.171, C.172, E.173, L.184 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:L.105, B:E.173 GOL.6: 10 residues within 4Å: Chain D: V.214, D.216, F.219, C.249, R.250, V.251, P.252, S.255, F.299, S.334 3 PLIP interactions: 3 interactions with chain D Hydrogen bonds: D:D.216, D:D.216, D:S.334

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Hashimoto, H. et al., Structural Basis of Protein Arginine Methyltransferase Activation by a Catalytically Dead Homolog (Prozyme). J.Mol.Biol. (2020)

Release Date

2019-06-12

Peptides

Arginine N-methyltransferase, putative: AC
Arginine N-methyltransferase, putative: BD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

C
C

B
B

D
D

Arginine N-methyltransferase, putative

Arginine N-methyltransferase, putative