SMTL ID : 6drr.1 (2 other biounits)

Crystal structure of Cj0485 dehydrogenase

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.60 Å

Oligo State

homo-dimer

Ligands

9 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.1: 6 residues within 4Å: Chain A: N.89, G.91, I.138, V.139, Y.153, K.157 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:G.91, A:V.139 Water bridges: A:Y.153 EDO.2: 8 residues within 4Å: Chain A: N.7, K.8, V.9, H.80, G.81, G.82, Y.84, E.131 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:V.9, A:G.81, A:Y.84 EDO.3: 3 residues within 4Å: Chain A: T.145, Y.250, V.251 No protein-ligand interaction detected (PLIP) EDO.4: 5 residues within 4Å: Chain A: D.46, K.50, Y.56, E.57, F.58 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:F.58, A:F.58 Water bridges: A:D.46, A:D.46 EDO.5: 3 residues within 4Å: Chain A: G.143, A.158, M.161 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:G.143 EDO.6: 5 residues within 4Å: Chain A: E.192, L.195, Q.196, P.201, Y.205 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:Q.196 EDO.7: 3 residues within 4Å: Chain B: T.145, Y.250, V.251 No protein-ligand interaction detected (PLIP) EDO.8: 8 residues within 4Å: Chain B: N.7, K.8, V.9, H.80, G.81, G.82, Y.84, E.131 3 PLIP interactions: 3 interactions with chain B Hydrogen bonds: B:V.9, B:G.81, B:Y.84 EDO.9: 7 residues within 4Å: Chain B: N.89, G.91, T.92, I.138, V.139, Y.153, K.157 3 PLIP interactions: 3 interactions with chain B Hydrogen bonds: B:G.91, B:V.139, B:Y.153

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Garber, J.M. et al., The gastrointestinal pathogen Campylobacter jejuni metabolizes sugars with potential help from commensal Bacteroides vulgatus. Commun Biol (2020)

Release Date

2019-07-10

Peptides

Short-chain dehydrogenase: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
B

B
A

Short-chain dehydrogenase

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