SMTL ID : 6ds0.1

Structural Determinants of Activation and Biased Agonism at the 5-HT2B Receptor

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 3.19 Å

Oligo State

monomer

Ligands

1 x CLR: CHOLESTEROL(Non-covalent)

CLR.1: 8 residues within 4Å: Chain A: I.26, I.31, I.34, G.35, T.38, L.42, Y.400, Y.405 5 PLIP interactions: 5 interactions with chain A Hydrophobic interactions: A:I.26, A:I.31, A:I.34, A:L.42 Hydrogen bonds: A:Y.405

1 x OLC: (2R)-2,3-dihydroxypropyl (9Z)-octadec-9-enoate(Non-covalent)

OLC.2: 8 residues within 4Å: Chain A: S.115, M.198, I.199, T.201, Y.202, T.205, L.332, F.336 8 PLIP interactions: 8 interactions with chain A Hydrophobic interactions: A:I.199, A:I.199, A:Y.202, A:Y.202 Hydrogen bonds: A:S.115, A:S.115, A:T.205, A:S.329

1 x PEG: DI(HYDROXYETHYL)ETHER(Non-functional Binders)

PEG.3: 4 residues within 4Å: Chain A: L.58, Y.386, F.389, N.390 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:N.390

1 x H8M: (1S)-1-[(2-chloro-3,4-dimethoxyphenyl)methyl]-6-methyl-2,3,4,9-tetrahydro-1H-beta-carboline(Non-covalent)

H8M.4: 15 residues within 4Å: Chain A: A.76, T.79, W.96, D.100, V.101, L.174, F.182, G.186, S.187, F.346, N.350, L.368, E.369, V.372, Y.376 11 PLIP interactions: 11 interactions with chain A Hydrophobic interactions: A:W.96, A:V.101, A:V.101, A:L.174, A:F.182, A:F.346, A:V.372, A:V.372 Hydrogen bonds: A:D.100, A:Y.376 Water bridges: A:N.350

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

McCorvy, J.D. et al., Structural determinants of 5-HT2Breceptor activation and biased agonism. Nat. Struct. Mol. Biol. (2018)

Release Date

2018-08-29

Peptides

5HT2B receptor, BRIL chimera: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Membrane

We predict this structure to be a membrane protein.
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5HT2B receptor, BRIL chimera

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