SMTL ID : 6ds5.1

Cryo EM structure of human SEIPIN

Coordinates

PDB Format Compare

Method

ELECTRON MICROSCOPY

Oligo State

homo-11-mer

Ligands

11 x NAG- NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG-NAG.1: 4 residues within 4Å: Chain A: N.99, Y.144, R.146, G.147 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:R.146, A:G.147 NAG-NAG.2: 4 residues within 4Å: Chain B: N.99, Y.144, R.146, G.147 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:R.146, B:G.147 NAG-NAG.3: 4 residues within 4Å: Chain C: N.99, Y.144, R.146, G.147 2 PLIP interactions: 2 interactions with chain C Hydrogen bonds: C:R.146, C:G.147 NAG-NAG.4: 4 residues within 4Å: Chain D: N.99, Y.144, R.146, G.147 2 PLIP interactions: 2 interactions with chain D Hydrogen bonds: D:R.146, D:G.147 NAG-NAG.5: 4 residues within 4Å: Chain E: N.99, Y.144, R.146, G.147 2 PLIP interactions: 2 interactions with chain E Hydrogen bonds: E:R.146, E:G.147 NAG-NAG.6: 4 residues within 4Å: Chain F: N.99, Y.144, R.146, G.147 2 PLIP interactions: 2 interactions with chain F Hydrogen bonds: F:R.146, F:G.147 NAG-NAG.7: 4 residues within 4Å: Chain G: N.99, Y.144, R.146, G.147 2 PLIP interactions: 2 interactions with chain G Hydrogen bonds: G:R.146, G:G.147 NAG-NAG.8: 4 residues within 4Å: Chain H: N.99, Y.144, R.146, G.147 2 PLIP interactions: 2 interactions with chain H Hydrogen bonds: H:R.146, H:G.147 NAG-NAG.9: 4 residues within 4Å: Chain I: N.99, Y.144, R.146, G.147 2 PLIP interactions: 2 interactions with chain I Hydrogen bonds: I:R.146, I:G.147 NAG-NAG.10: 4 residues within 4Å: Chain J: N.99, Y.144, R.146, G.147 2 PLIP interactions: 2 interactions with chain J Hydrogen bonds: J:R.146, J:G.147 NAG-NAG.11: 4 residues within 4Å: Chain K: N.99, Y.144, R.146, G.147 2 PLIP interactions: 2 interactions with chain K Hydrogen bonds: K:R.146, K:G.147

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Yan, R. et al., Human SEIPIN Binds Anionic Phospholipids. Dev. Cell (2018)

Release Date

2018-10-24

Peptides

Seipin: ABCDEFGHIJK

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

D
D

E
E

F
F

G
G

H
H

I
I

J
J

K
K

Seipin