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SMTL ID : 6dsr.1
Re-refinement of P. falciparum orotidine 5'-monophosphate decarboxylase
Coordinates
PDB Format
Compare
Method
X-RAY DIFFRACTION 2.60 Å
Oligo State
homo-dimer
Ligands
2 x
U5P
:
URIDINE-5'-MONOPHOSPHATE
(Non-covalent)
U5P.1:
18 residues within 4Å:
Chain A:
D.23
,
K.102
,
N.104
,
D.136
,
K.138
,
T.194
,
T.195
,
V.240
,
P.264
,
I.266
,
A.268
,
Q.269
,
N.291
,
G.293
,
R.294
Chain B:
D.141
,
I.142
,
T.145
18
PLIP interactions
:
16 interactions with chain A
,
2 interactions with chain B
Hydrophobic interactions:
A:V.240
,
A:P.264
Hydrogen bonds:
A:D.23
,
A:K.102
,
A:N.104
,
A:D.136
,
A:K.138
,
A:T.195
,
A:T.195
,
A:T.195
,
A:Q.269
,
A:N.291
,
A:G.293
,
A:R.294
,
B:D.141
,
B:T.145
Water bridges:
A:D.23
Salt bridges:
A:R.294
U5P.2:
17 residues within 4Å:
Chain A:
D.141
,
I.142
,
T.145
Chain B:
D.23
,
K.102
,
N.104
,
D.136
,
K.138
,
T.194
,
T.195
,
V.240
,
P.264
,
A.268
,
Q.269
,
N.291
,
G.293
,
R.294
16
PLIP interactions
:
1 interactions with chain A
,
15 interactions with chain B
Hydrogen bonds:
A:D.141
,
B:K.102
,
B:N.104
,
B:K.138
,
B:T.195
,
B:T.195
,
B:I.266
,
B:Q.269
,
B:N.291
,
B:G.293
,
B:R.294
Hydrophobic interactions:
B:V.240
,
B:P.264
Water bridges:
B:A.268
,
B:A.268
Salt bridges:
B:R.294
Links
RCSB
PDBe
PDBe-KB
PDBj
PDBsum
CATH
PLIP
Citation
Novak, W.R.P. et al., Re-refinement of Plasmodium falciparum orotidine 5'-monophosphate decarboxylase provides a clearer picture of an important malarial drug target. Acta Crystallogr F Struct Biol Commun (2018)
Release Date
2018-10-17
Peptides
Orotidine 5'-monophosphate decarboxylase:
A
B
SMTL:PDB
SMTL Chain Id:
PDB Chain Id:
A
A
B
B
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Secondary Structure
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2° Structure
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NGL
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Orotidine 5'-monophosphate decarboxylase
Related Entries With Identical Sequence
2f84.1
|
2q8l.1
|
2za1.1
|
2za2.1
|
2za3.1
|
2zcg.1
|
3vi2.1
|
6dsq.1
|
6dss.1
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