SMTL ID : 6dsr.1

Re-refinement of P. falciparum orotidine 5'-monophosphate decarboxylase

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.60 Å

Oligo State

homo-dimer

Ligands

2 x U5P: URIDINE-5'-MONOPHOSPHATE(Non-covalent)

U5P.1: 18 residues within 4Å: Chain A: D.23, K.102, N.104, D.136, K.138, T.194, T.195, V.240, P.264, I.266, A.268, Q.269, N.291, G.293, R.294 Chain B: D.141, I.142, T.145 18 PLIP interactions: 16 interactions with chain A, 2 interactions with chain B Hydrophobic interactions: A:V.240, A:P.264 Hydrogen bonds: A:D.23, A:K.102, A:N.104, A:D.136, A:K.138, A:T.195, A:T.195, A:T.195, A:Q.269, A:N.291, A:G.293, A:R.294, B:D.141, B:T.145 Water bridges: A:D.23 Salt bridges: A:R.294 U5P.2: 17 residues within 4Å: Chain A: D.141, I.142, T.145 Chain B: D.23, K.102, N.104, D.136, K.138, T.194, T.195, V.240, P.264, A.268, Q.269, N.291, G.293, R.294 16 PLIP interactions: 1 interactions with chain A, 15 interactions with chain B Hydrogen bonds: A:D.141, B:K.102, B:N.104, B:K.138, B:T.195, B:T.195, B:I.266, B:Q.269, B:N.291, B:G.293, B:R.294 Hydrophobic interactions: B:V.240, B:P.264 Water bridges: B:A.268, B:A.268 Salt bridges: B:R.294

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Novak, W.R.P. et al., Re-refinement of Plasmodium falciparum orotidine 5'-monophosphate decarboxylase provides a clearer picture of an important malarial drug target. Acta Crystallogr F Struct Biol Commun (2018)

Release Date

2018-10-17

Peptides

Orotidine 5'-monophosphate decarboxylase: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Orotidine 5'-monophosphate decarboxylase

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