SMTL ID : 6du9.2 (1 other biounit)

Crystal Structure of Human Prion Protein 90-231

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.33 Å

Oligo State

homo-tetramer

Ligands

12 x CD: CADMIUM ION(Non-covalent)

CD.1: 5 residues within 4Å: Chain A: H.88 Chain B: H.88 Ligands: CL.4, CD.5, CL.8 2 PLIP interactions: 1 interactions with chain A, 1 interactions with chain B Metal complexes: A:H.88, B:H.88 CD.2: 2 residues within 4Å: Chain A: H.51, D.58 5 PLIP interactions: 2 interactions with chain A, 3 Ligand-Water interactions Metal complexes: A:H.51, A:D.58, H2O.1, H2O.1, H2O.2 CD.3: 2 residues within 4Å: Chain A: E.118 Chain B: D.89 5 PLIP interactions: 2 interactions with chain B, 1 interactions with chain A, 2 Ligand-Water interactions Metal complexes: B:D.89, B:D.89, A:E.118, H2O.1, H2O.1 CD.5: 5 residues within 4Å: Chain A: H.88 Chain B: H.88 Ligands: CD.1, CL.4, CL.8 2 PLIP interactions: 1 interactions with chain A, 1 interactions with chain B Metal complexes: A:H.88, B:H.88 CD.6: 2 residues within 4Å: Chain B: H.51, D.58 5 PLIP interactions: 2 interactions with chain B, 3 Ligand-Water interactions Metal complexes: B:H.51, B:D.58, H2O.1, H2O.1, H2O.3 CD.7: 2 residues within 4Å: Chain A: D.89 Chain B: E.118 5 PLIP interactions: 2 interactions with chain A, 1 interactions with chain B, 2 Ligand-Water interactions Metal complexes: A:D.89, A:D.89, B:E.118, H2O.2, H2O.2 CD.9: 5 residues within 4Å: Chain C: H.88 Chain D: H.88 Ligands: CL.12, CD.13, CL.16 2 PLIP interactions: 1 interactions with chain C, 1 interactions with chain D Metal complexes: C:H.88, D:H.88 CD.10: 2 residues within 4Å: Chain C: H.51, D.58 5 PLIP interactions: 2 interactions with chain C, 3 Ligand-Water interactions Metal complexes: C:H.51, C:D.58, H2O.1, H2O.2, H2O.2 CD.11: 2 residues within 4Å: Chain C: E.118 Chain D: D.89 5 PLIP interactions: 2 interactions with chain D, 1 interactions with chain C, 2 Ligand-Water interactions Metal complexes: D:D.89, D:D.89, C:E.118, H2O.2, H2O.3 CD.13: 5 residues within 4Å: Chain C: H.88 Chain D: H.88 Ligands: CD.9, CL.12, CL.16 2 PLIP interactions: 1 interactions with chain C, 1 interactions with chain D Metal complexes: C:H.88, D:H.88 CD.14: 2 residues within 4Å: Chain D: H.51, D.58 5 PLIP interactions: 2 interactions with chain D, 3 Ligand-Water interactions Metal complexes: D:H.51, D:D.58, H2O.2, H2O.3, H2O.3 CD.15: 2 residues within 4Å: Chain C: D.89 Chain D: E.118 5 PLIP interactions: 1 interactions with chain D, 2 interactions with chain C, 2 Ligand-Water interactions Metal complexes: D:E.118, C:D.89, C:D.89, H2O.3, H2O.3

4 x CL: CHLORIDE ION(Non-functional Binders)

CL.4: 4 residues within 4Å: Chain A: H.88 Chain B: H.88 Ligands: CD.1, CD.5 Ligand excluded by PLIP CL.8: 4 residues within 4Å: Chain A: H.88 Chain B: H.88 Ligands: CD.1, CD.5 Ligand excluded by PLIP CL.12: 4 residues within 4Å: Chain C: H.88 Chain D: H.88 Ligands: CD.9, CD.13 Ligand excluded by PLIP CL.16: 4 residues within 4Å: Chain C: H.88 Chain D: H.88 Ligands: CD.9, CD.13 Ligand excluded by PLIP

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Rangel, V.L. et al., Crystal Structure of Human Prion Protein 90-231. To Be Published

Release Date

2019-07-03

Peptides

Major prion protein: ABCD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

C
A

D
A

Major prion protein

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