- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.54 Å
- Oligo State
- homo-octamer
- Ligands
- 8 x HDG: (2R,5S)-2-amino-6-[(2R,3S,4R,5R)-5-(6-amino-9H-purin-9-yl)-3,4-dihydroxytetrahydrofuran-2-yl]-5-[(benzylamino)methyl]-N-[2-(4-methoxyphenyl)ethyl]hexanamide (non-preferred name)(Non-covalent)
- 8 x P15: 2,5,8,11,14,17-HEXAOXANONADECAN-19-OL(Non-covalent)
P15.2: 8 residues within 4Å:- Chain A: F.7, N.16, R.23, Y.116, E.121, H.269, W.270
- Ligands: HDG.1
4 PLIP interactions:4 interactions with chain A- Hydrogen bonds: A:R.23, A:R.23
- Water bridges: A:Y.116, A:N.120
P15.8: 7 residues within 4Å:- Chain B: N.16, R.23, Y.116, N.120, H.269, W.270
- Ligands: HDG.7
4 PLIP interactions:4 interactions with chain B- Hydrogen bonds: B:R.23, B:R.23
- Water bridges: B:Y.116, B:N.120
P15.12: 8 residues within 4Å:- Chain C: F.7, N.16, R.23, Y.116, E.121, H.269, W.270
- Ligands: HDG.11
4 PLIP interactions:4 interactions with chain C- Hydrogen bonds: C:R.23, C:R.23
- Water bridges: C:Y.116, C:N.120
P15.18: 7 residues within 4Å:- Chain D: N.16, R.23, Y.116, N.120, H.269, W.270
- Ligands: HDG.17
4 PLIP interactions:4 interactions with chain D- Hydrogen bonds: D:R.23, D:R.23
- Water bridges: D:Y.116, D:N.120
P15.22: 8 residues within 4Å:- Chain E: F.7, N.16, R.23, Y.116, E.121, H.269, W.270
- Ligands: HDG.21
4 PLIP interactions:4 interactions with chain E- Hydrogen bonds: E:R.23, E:R.23
- Water bridges: E:Y.116, E:N.120
P15.28: 7 residues within 4Å:- Chain F: N.16, R.23, Y.116, N.120, H.269, W.270
- Ligands: HDG.27
5 PLIP interactions:5 interactions with chain F- Hydrogen bonds: F:R.23, F:R.23
- Water bridges: F:Y.116, F:Y.116, F:N.120
P15.32: 8 residues within 4Å:- Chain G: F.7, N.16, R.23, Y.116, E.121, H.269, W.270
- Ligands: HDG.31
4 PLIP interactions:4 interactions with chain G- Hydrogen bonds: G:R.23, G:R.23
- Water bridges: G:Y.116, G:N.120
P15.38: 7 residues within 4Å:- Chain H: N.16, R.23, Y.116, N.120, H.269, W.270
- Ligands: HDG.37
5 PLIP interactions:5 interactions with chain H- Hydrogen bonds: H:R.23, H:R.23
- Water bridges: H:Y.116, H:Y.116, H:N.120
- 24 x UNX: UNKNOWN ATOM OR ION(Non-functional Binders)
UNX.3: 2 residues within 4Å:- Chain A: L.267, H.269
Ligand excluded by PLIPUNX.4: 2 residues within 4Å:- Chain A: D.247, W.258
Ligand excluded by PLIPUNX.5: 4 residues within 4Å:- Chain A: F.190, L.276, N.320, L.322
Ligand excluded by PLIPUNX.6: 3 residues within 4Å:- Chain A: P.339
- Chain D: G.25, T.26
Ligand excluded by PLIPUNX.9: 2 residues within 4Å:- Chain B: D.247, W.258
Ligand excluded by PLIPUNX.10: 4 residues within 4Å:- Chain B: F.190, L.276, N.320, L.321
Ligand excluded by PLIPUNX.13: 2 residues within 4Å:- Chain C: L.267, H.269
Ligand excluded by PLIPUNX.14: 2 residues within 4Å:- Chain C: D.247, W.258
Ligand excluded by PLIPUNX.15: 4 residues within 4Å:- Chain C: F.190, L.276, N.320, L.322
Ligand excluded by PLIPUNX.16: 3 residues within 4Å:- Chain B: G.25, T.26
- Chain C: P.339
Ligand excluded by PLIPUNX.19: 2 residues within 4Å:- Chain D: D.247, W.258
Ligand excluded by PLIPUNX.20: 4 residues within 4Å:- Chain D: F.190, L.276, N.320, L.321
Ligand excluded by PLIPUNX.23: 2 residues within 4Å:- Chain E: L.267, H.269
Ligand excluded by PLIPUNX.24: 2 residues within 4Å:- Chain E: D.247, W.258
Ligand excluded by PLIPUNX.25: 4 residues within 4Å:- Chain E: F.190, L.276, N.320, L.322
Ligand excluded by PLIPUNX.26: 3 residues within 4Å:- Chain E: P.339
- Chain H: G.25, T.26
Ligand excluded by PLIPUNX.29: 2 residues within 4Å:- Chain F: D.247, W.258
Ligand excluded by PLIPUNX.30: 4 residues within 4Å:- Chain F: F.190, L.276, N.320, L.321
Ligand excluded by PLIPUNX.33: 2 residues within 4Å:- Chain G: L.267, H.269
Ligand excluded by PLIPUNX.34: 2 residues within 4Å:- Chain G: D.247, W.258
Ligand excluded by PLIPUNX.35: 4 residues within 4Å:- Chain G: F.190, L.276, N.320, L.322
Ligand excluded by PLIPUNX.36: 3 residues within 4Å:- Chain F: G.25, T.26
- Chain G: P.339
Ligand excluded by PLIPUNX.39: 2 residues within 4Å:- Chain H: D.247, W.258
Ligand excluded by PLIPUNX.40: 4 residues within 4Å:- Chain H: F.190, L.276, N.320, L.321
Ligand excluded by PLIP- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Zeng, H. et al., Crystal structure of human CARM1 with (R)-SKI-72. to be published
- Release Date
- 2018-07-25
- Peptides
- Histone-arginine methyltransferase CARM1: ABCDEFGH
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
BC
AD
BE
AF
BG
AH
B
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.54 Å
- Oligo State
- homo-octamer
- Ligands
- 8 x HDG: (2R,5S)-2-amino-6-[(2R,3S,4R,5R)-5-(6-amino-9H-purin-9-yl)-3,4-dihydroxytetrahydrofuran-2-yl]-5-[(benzylamino)methyl]-N-[2-(4-methoxyphenyl)ethyl]hexanamide (non-preferred name)(Non-covalent)
- 8 x P15: 2,5,8,11,14,17-HEXAOXANONADECAN-19-OL(Non-covalent)
- 24 x UNX: UNKNOWN ATOM OR ION(Non-functional Binders)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Zeng, H. et al., Crystal structure of human CARM1 with (R)-SKI-72. to be published
- Release Date
- 2018-07-25
- Peptides
- Histone-arginine methyltransferase CARM1: ABCDEFGH
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
BC
AD
BE
AF
BG
AH
B