SMTL ID : 6dvv.2 (1 other biounit)

2.25 Angstrom Resolution Crystal Structure of 6-phospho-alpha-glucosidase from Klebsiella pneumoniae in Complex with NAD and Mn2+.

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.25 Å

Oligo State

monomer

Ligands

1 x MN: MANGANESE (II) ION(Non-covalent)

MN.1: 3 residues within 4Å: Chain A: N.150, C.172, H.203 4 PLIP interactions: 2 interactions with chain A, 2 Ligand-Water interactions Metal complexes: A:C.172, A:H.203, H2O.1, H2O.6

2 x CL: CHLORIDE ION(Non-functional Binders)

CL.2: 5 residues within 4Å: Chain A: N.352, F.353, D.354, K.383, S.387 Ligand excluded by PLIP CL.3: 1 residues within 4Å: Ligands: SO4.6 Ligand excluded by PLIP

5 x SO4: SULFATE ION(Non-functional Binders)

SO4.4: 3 residues within 4Å: Chain A: R.96, R.286, R.294 5 PLIP interactions: 5 interactions with chain A Water bridges: A:R.96, A:E.112 Salt bridges: A:R.96, A:R.286, A:R.294 SO4.5: 3 residues within 4Å: Chain A: R.197, T.208, S.209 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:T.208, A:T.208 Salt bridges: A:R.197 SO4.6: 3 residues within 4Å: Chain A: P.379, H.380 Ligands: CL.3 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:H.380 Salt bridges: A:H.380 SO4.7: 7 residues within 4Å: Chain A: S.16, T.17, F.18, R.47, H.87, R.89, Y.93 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:T.17 Salt bridges: A:R.47, A:R.89 SO4.8: 1 residues within 4Å: Chain A: K.189 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:D.190 Salt bridges: A:K.189

2 x PEG: DI(HYDROXYETHYL)ETHER(Non-functional Binders)

PEG.9: 7 residues within 4Å: Chain A: G.110, Q.111, D.246, K.268, Y.269, V.276, R.286 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:K.268, A:Y.269 Water bridges: A:E.112, A:V.276 PEG.11: 4 residues within 4Å: Chain A: R.286, E.289, H.293, R.294 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:R.286, A:R.286, A:R.294 Water bridges: A:R.294

1 x GOL: GLYCEROL(Non-functional Binders)

GOL.10: 2 residues within 4Å: Chain A: R.160, R.161 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:R.160, A:R.160, A:D.356

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Inniss, N.L. et al., A Structural Systems Biology Approach to High-Risk CG23 Klebsiella pneumoniae. Microbiol Resour Announc (2023)

Release Date

2018-07-18

Peptides

6-phospho-alpha-glucosidase: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
B

6-phospho-alpha-glucosidase

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