SMTL ID : 6dvy.1

Cryo-EM structure of mouse TRPV3 in complex with 2-Aminoethoxydiphenyl borate (2-APB)

Coordinates

PDB Format Compare

Method

ELECTRON MICROSCOPY

Oligo State

homo-tetramer

Ligands

8 x FZ4: 2-aminoethyl diphenylborinate(Covalent)(Non-covalent)

FZ4.1: 5 residues within 4Å: Chain A: L.420, H.426, H.430, R.693, R.696 4 PLIP interactions: 4 interactions with chain A Hydrophobic interactions: A:H.426, A:R.696 pi-Stacking: A:W.433 pi-Cation interactions: A:H.426 FZ4.2: 11 residues within 4Å: Chain A: M.440, L.443, S.444, F.447, C.496, K.500, E.501, F.526, Y.565, F.703, M.706 4 PLIP interactions: 4 interactions with chain A Hydrophobic interactions: A:F.447, A:F.526, A:F.703 Hydrogen bonds: A:C.496 FZ4.3: 6 residues within 4Å: Chain B: L.420, T.421, H.426, H.430, R.693, R.696 4 PLIP interactions: 4 interactions with chain B Hydrophobic interactions: B:H.426, B:R.696 pi-Stacking: B:W.433 pi-Cation interactions: B:H.426 FZ4.4: 11 residues within 4Å: Chain B: M.440, L.443, S.444, F.447, C.496, K.500, E.501, F.526, Y.565, F.703, M.706 4 PLIP interactions: 4 interactions with chain B Hydrophobic interactions: B:F.447, B:F.526, B:F.703 Hydrogen bonds: B:C.496 FZ4.5: 5 residues within 4Å: Chain C: L.420, H.426, H.430, R.693, R.696 4 PLIP interactions: 4 interactions with chain C Hydrophobic interactions: C:H.426, C:R.696 pi-Stacking: C:W.433 pi-Cation interactions: C:H.426 FZ4.6: 11 residues within 4Å: Chain C: M.440, L.443, S.444, F.447, C.496, K.500, E.501, F.526, Y.565, F.703, M.706 4 PLIP interactions: 4 interactions with chain C Hydrophobic interactions: C:F.447, C:F.526, C:F.703 Hydrogen bonds: C:C.496 FZ4.7: 5 residues within 4Å: Chain D: L.420, H.426, H.430, R.693, R.696 4 PLIP interactions: 4 interactions with chain D Hydrophobic interactions: D:H.426, D:R.696 pi-Stacking: D:W.433 pi-Cation interactions: D:H.426 FZ4.8: 11 residues within 4Å: Chain D: M.440, L.443, S.444, F.447, C.496, K.500, E.501, F.526, Y.565, F.703, M.706 4 PLIP interactions: 4 interactions with chain D Hydrophobic interactions: D:F.447, D:F.526, D:F.703 Hydrogen bonds: D:C.496

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Singh, A.K. et al., Structure and gating mechanism of the transient receptor potential channel TRPV3. Nat. Struct. Mol. Biol. (2018)

Release Date

2018-09-05

Peptides

Transient receptor potential cation channel subfamily V member 3: ABCD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

D
D

Membrane

We predict this structure to be a membrane protein.
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Transient receptor potential cation channel subfamily V member 3

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