SMTL ID : 6dvz.1

Cryo-EM structure of mouse TRPV3-Y564A in complex with 2-Aminoethoxydiphenyl borate (2-APB)

Coordinates

PDB Format Compare

Method

ELECTRON MICROSCOPY

Oligo State

homo-tetramer

Ligands

12 x FZ4: 2-aminoethyl diphenylborinate(Covalent)(Non-covalent)

FZ4.1: 7 residues within 4Å: Chain A: H.417, L.420, T.421, H.426, H.430, R.693, L.694 5 PLIP interactions: 5 interactions with chain A Hydrophobic interactions: A:H.430, A:R.693 Hydrogen bonds: A:T.421, A:T.421 pi-Cation interactions: A:R.693 FZ4.2: 7 residues within 4Å: Chain A: S.444, W.493, C.496, K.500, E.501, F.526, Y.565 3 PLIP interactions: 3 interactions with chain A Hydrophobic interactions: A:W.493, A:K.500, A:F.526 FZ4.3: 6 residues within 4Å: Chain A: V.458, R.462, R.464, R.487, Y.540, L.551 4 PLIP interactions: 4 interactions with chain A Hydrophobic interactions: A:R.462, A:R.487, A:L.551 Hydrogen bonds: A:R.487 FZ4.4: 7 residues within 4Å: Chain B: H.417, L.420, T.421, H.426, H.430, R.693, L.694 5 PLIP interactions: 5 interactions with chain B Hydrophobic interactions: B:H.430, B:R.693 Hydrogen bonds: B:T.421, B:T.421 pi-Cation interactions: B:R.693 FZ4.5: 7 residues within 4Å: Chain B: S.444, W.493, C.496, K.500, E.501, F.526, Y.565 3 PLIP interactions: 3 interactions with chain B Hydrophobic interactions: B:W.493, B:K.500, B:F.526 FZ4.6: 6 residues within 4Å: Chain B: V.458, R.462, R.464, R.487, Y.540, L.551 3 PLIP interactions: 3 interactions with chain B Hydrophobic interactions: B:R.462, B:R.487, B:L.551 FZ4.7: 7 residues within 4Å: Chain C: H.417, L.420, T.421, H.426, H.430, R.693, L.694 5 PLIP interactions: 5 interactions with chain C Hydrophobic interactions: C:H.430, C:R.693 Hydrogen bonds: C:T.421, C:T.421 pi-Cation interactions: C:R.693 FZ4.8: 7 residues within 4Å: Chain C: S.444, W.493, C.496, K.500, E.501, F.526, Y.565 3 PLIP interactions: 3 interactions with chain C Hydrophobic interactions: C:W.493, C:K.500, C:F.526 FZ4.9: 6 residues within 4Å: Chain C: V.458, R.462, R.464, R.487, Y.540, L.551 4 PLIP interactions: 4 interactions with chain C Hydrophobic interactions: C:R.462, C:R.487, C:L.551 Hydrogen bonds: C:R.487 FZ4.10: 7 residues within 4Å: Chain D: H.417, L.420, T.421, H.426, H.430, R.693, L.694 5 PLIP interactions: 5 interactions with chain D Hydrophobic interactions: D:H.430, D:R.693 Hydrogen bonds: D:T.421, D:T.421 pi-Cation interactions: D:R.693 FZ4.11: 7 residues within 4Å: Chain D: S.444, W.493, C.496, K.500, E.501, F.526, Y.565 3 PLIP interactions: 3 interactions with chain D Hydrophobic interactions: D:W.493, D:K.500, D:F.526 FZ4.12: 6 residues within 4Å: Chain D: V.458, R.462, R.464, R.487, Y.540, L.551 3 PLIP interactions: 3 interactions with chain D Hydrophobic interactions: D:R.462, D:R.487, D:L.551

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Singh, A.K. et al., Structure and gating mechanism of the transient receptor potential channel TRPV3. Nat. Struct. Mol. Biol. (2018)

Release Date

2018-09-05

Peptides

Transient receptor potential cation channel subfamily V member 3: ABCD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

D
D

Membrane

We predict this structure to be a membrane protein.
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Transient receptor potential cation channel subfamily V member 3