SMTL ID : 6dwi.6 (7 other biounits)

Structure of the 4462 Antibody Fab fragment bound to a Staphylococcus aureus wall techoic acid analog

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.39 Å

Oligo State

hetero-1-1-mer

Ligands

1 x HD4: 4-O-[2-acetamido-2-deoxy-beta-D-glucopyranosyl]-1-O-phosphono-D-ribitol(Non-covalent)

HD4.1: 8 residues within 4Å: Chain A: Y.110 Chain B: N.51, D.52, K.117, N.118, S.119, G.120, I.121 10 PLIP interactions: 9 interactions with chain B, 1 interactions with chain A Hydrophobic interactions: B:I.121, A:Y.110 Hydrogen bonds: B:D.52, B:N.118, B:S.119, B:S.119, B:G.120, B:I.121 Salt bridges: B:K.117, B:K.117

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Fong, R. et al., Structural investigation of human S. aureus-targeting antibodies that bind wall teichoic acid. MAbs (2018)

Release Date

2018-08-29

Peptides

4462 Fab Light Chain: A
4462 Fab Heavy chain: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
K

B
L

4462 Fab Light Chain

4462 Fab Heavy chain

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