SMTL ID : 6dxl.1

Linked amidobenzimidazole STING agonist

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.45 Å

Oligo State

homo-dimer

Ligands

1 x HG4: 1,1'-(butane-1,4-diyl)bis{2-[(1-ethyl-3-methyl-1H-pyrazole-5-carbonyl)amino]-1H-benzimidazole-5-carboxamide}(Non-covalent)

HG4.1: 23 residues within 4Å: Chain A: L.7, S.10, Y.11, G.14, Y.15, Y.88, S.89, N.90, T.111, P.112 Chain B: G.6, L.7, S.10, Y.11, G.14, Y.15, V.87, Y.88, S.89, N.90, T.111, P.112, T.115 12 PLIP interactions: 6 interactions with chain B, 6 interactions with chain A Hydrophobic interactions: B:L.7, B:Y.15, B:Y.88, B:Y.88, A:L.7, A:Y.15 Hydrogen bonds: B:S.89, B:S.89, A:S.89, A:S.89, A:S.89, A:T.111

2 x CA: CALCIUM ION(Non-covalent)

CA.2: 2 residues within 4Å: Chain A: D.53, E.164 5 PLIP interactions: 3 interactions with chain A, 2 Ligand-Water interactions Metal complexes: A:D.53, A:E.164, A:E.164, H2O.1, H2O.1 CA.3: 2 residues within 4Å: Chain B: V.189, T.190 4 PLIP interactions: 2 interactions with chain B, 2 Ligand-Water interactions Metal complexes: B:V.189, B:T.190, H2O.1, H2O.1

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Ramanjulu, J.M. et al., Design of amidobenzimidazole STING receptor agonists with systemic activity. Nature (2018)

Release Date

2018-11-07

Peptides

Stimulator of interferon protein: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Stimulator of interferon protein

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