SMTL ID : 6dxy.2 (1 other biounit)

Murine N-acylethanolamine-hydrolyzing acid amidase (NAAA)

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.85 Å

Oligo State

hetero-1-1-mer

Ligands

6 x CL: CHLORIDE ION(Non-functional Binders)

CL.1: 3 residues within 4Å: Chain A: Y.37, D.38, F.41 Ligand excluded by PLIP CL.3: 5 residues within 4Å: Chain B: E.160, T.161, N.162, Y.163, R.176 Ligand excluded by PLIP CL.4: 5 residues within 4Å: Chain A: L.22 Chain B: F.44, R.96, K.97, S.100 Ligand excluded by PLIP CL.5: 4 residues within 4Å: Chain B: K.73, Y.163, D.164, K.167 Ligand excluded by PLIP CL.6: 3 residues within 4Å: Chain B: Y.14, N.192, L.193 Ligand excluded by PLIP CL.7: 3 residues within 4Å: Chain B: V.109, Y.110, A.113 Ligand excluded by PLIP

1 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG.2: 5 residues within 4Å: Chain B: F.157, T.177, I.180, K.181, N.184 3 PLIP interactions: 3 interactions with chain B Hydrophobic interactions: B:I.180, B:K.181 Hydrogen bonds: B:N.184

1 x PG4: TETRAETHYLENE GLYCOL(Non-functional Binders)

PG4.8: 9 residues within 4Å: Chain B: L.193, E.194, F.197, V.215, D.222, K.223, L.225, M.227 Ligands: P33.9 1 PLIP interactions: 1 interactions with chain B Hydrogen bonds: B:K.223

1 x P33: 3,6,9,12,15,18-HEXAOXAICOSANE-1,20-DIOL(Non-covalent)

P33.9: 10 residues within 4Å: Chain B: A.182, A.185, T.186, E.194, F.197, Q.198, V.199, S.201, L.202 Ligands: PG4.8 1 PLIP interactions: 1 interactions with chain B Hydrogen bonds: B:Q.198

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Gorelik, A. et al., Molecular mechanism of activation of the immunoregulatory amidase NAAA. Proc. Natl. Acad. Sci. U.S.A. (2018)

Release Date

2018-09-26

Peptides

N-acylethanolamine-hydrolyzing acid amidase subunit alpha: A
N-acylethanolamine-hydrolyzing acid amidase subunit beta: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
C

B
D

N-acylethanolamine-hydrolyzing acid amidase subunit alpha

N-acylethanolamine-hydrolyzing acid amidase subunit beta

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