- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.91 Å
- Oligo State
- homo-trimer
- Ligands
- 5 x CL: CHLORIDE ION(Non-functional Binders)
- 7 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)
EDO.3: 4 residues within 4Å:- Chain A: D.248
- Chain C: F.290, V.292
- Ligands: EDO.12
1 PLIP interactions:1 interactions with chain C- Hydrogen bonds: C:F.290
EDO.4: 2 residues within 4Å:- Ligands: EDO.5, EDO.12
No protein-ligand interaction detected (PLIP)EDO.5: 2 residues within 4Å:- Ligands: EDO.4, EDO.12
No protein-ligand interaction detected (PLIP)EDO.12: 5 residues within 4Å:- Chain C: L.293, L.294
- Ligands: EDO.3, EDO.4, EDO.5
2 PLIP interactions:2 interactions with chain C- Hydrogen bonds: C:L.294, C:L.294
EDO.13: 4 residues within 4Å:- Chain B: W.203
- Chain C: F.198, M.199, T.202
2 PLIP interactions:1 interactions with chain B, 1 interactions with chain C- Hydrogen bonds: B:W.203
- Water bridges: C:M.199
EDO.14: 2 residues within 4Å:- Chain C: S.274
- Ligands: EDO.15
1 PLIP interactions:1 interactions with chain C- Hydrogen bonds: C:S.274
EDO.15: 1 residues within 4Å:- Ligands: EDO.14
No protein-ligand interaction detected (PLIP)- 3 x OS6: (3R,4S)-1-[(4-amino-5H-pyrrolo[3,2-d]pyrimidin-7-yl)methyl]-4-({[3-(1-butyl-1H-1,2,3-triazol-4-yl)propyl]sulfanyl}methyl)pyrrolidin-3-ol(Non-covalent)
OS6.6: 19 residues within 4Å:- Chain A: P.83, T.106, A.108, C.109, G.110, I.186, F.191, I.208, N.209, M.210, T.233, D.234, D.236, V.245, V.250, L.254
- Chain C: H.151, L.293
- Ligands: CL.2
8 PLIP interactions:8 interactions with chain A- Hydrophobic interactions: A:T.106, A:L.254
- Hydrogen bonds: A:A.108, A:T.233, A:D.234, A:D.236, A:D.236
- pi-Stacking: A:F.191
OS6.9: 22 residues within 4Å:- Chain A: H.151, L.293
- Chain B: G.30, P.83, T.106, T.107, A.108, C.109, G.110, I.186, F.191, I.208, N.209, M.210, T.233, D.234, D.236, V.245, V.250, L.251, L.254
- Ligands: CL.7
8 PLIP interactions:8 interactions with chain B- Hydrophobic interactions: B:L.251, B:L.254
- Hydrogen bonds: B:A.108, B:T.233, B:D.234, B:D.236, B:D.236
- pi-Stacking: B:F.191
OS6.16: 20 residues within 4Å:- Chain B: H.151, L.293
- Chain C: P.83, A.108, C.109, G.110, I.186, F.191, I.208, N.209, M.210, T.233, D.234, D.236, V.245, V.250, L.251, L.254, K.255
- Ligands: CL.11
5 PLIP interactions:5 interactions with chain C- Hydrogen bonds: C:T.233, C:D.234, C:D.236, C:D.236
- pi-Stacking: C:F.191
- 1 x ACY: ACETIC ACID(Non-functional Binders)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Harijan, R.K. et al., Selective Inhibitors of Helicobacter pylori Methylthioadenosine Nucleosidase and Human Methylthioadenosine Phosphorylase. J. Med. Chem. (2019)
- Release Date
- 2019-03-20
- Peptides
- S-methyl-5'-thioadenosine phosphorylase: ABC
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
BC
C
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.91 Å
- Oligo State
- homo-trimer
- Ligands
- 5 x CL: CHLORIDE ION(Non-functional Binders)
- 7 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)
- 3 x OS6: (3R,4S)-1-[(4-amino-5H-pyrrolo[3,2-d]pyrimidin-7-yl)methyl]-4-({[3-(1-butyl-1H-1,2,3-triazol-4-yl)propyl]sulfanyl}methyl)pyrrolidin-3-ol(Non-covalent)
- 1 x ACY: ACETIC ACID(Non-functional Binders)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Harijan, R.K. et al., Selective Inhibitors of Helicobacter pylori Methylthioadenosine Nucleosidase and Human Methylthioadenosine Phosphorylase. J. Med. Chem. (2019)
- Release Date
- 2019-03-20
- Peptides
- S-methyl-5'-thioadenosine phosphorylase: ABC
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
BC
C