- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.26 Å
- Oligo State
- homo-tetramer
- Ligands
- 4 x K: POTASSIUM ION(Non-covalent)
- 4 x P61: (2E)-3-(3-fluoro-4-hydroxyphenyl)-2-{[(Z)-{3-hydroxy-2-methyl-5-[(phosphonooxy)methyl]pyridin-4(1H)-ylidene}methyl]imino}propanoic acid(Non-covalent)
P61.2: 22 residues within 4Å:- Chain A: F.36, T.49, S.51, Q.98, G.99, R.100, E.103, F.123, T.124, T.125, N.185, D.214, T.216, R.217, S.254, K.256, K.257, M.379, R.381, R.404, F.449
- Chain B: Y.71
26 PLIP interactions:24 interactions with chain A, 2 interactions with chain B- Hydrophobic interactions: A:F.123, A:T.125, B:Y.71
- Hydrogen bonds: A:T.49, A:S.51, A:Q.98, A:G.99, A:R.100, A:T.124, A:T.126, A:N.185, A:D.214, A:T.216, A:R.217, A:R.217, A:S.254, A:K.257, A:R.381
- Water bridges: A:S.51, B:Y.291
- Salt bridges: A:R.100, A:R.217, A:K.257, A:K.257, A:R.404
- pi-Stacking: A:F.123
P61.5: 21 residues within 4Å:- Chain A: Y.71
- Chain B: T.49, S.51, Q.98, G.99, R.100, E.103, F.123, T.124, T.125, T.126, N.185, D.214, T.216, R.217, S.254, K.256, K.257, M.379, R.404, F.449
22 PLIP interactions:2 interactions with chain A, 20 interactions with chain B- Hydrophobic interactions: A:Y.71, B:F.123
- Water bridges: A:Y.71, B:R.100, B:T.216, B:K.256
- Hydrogen bonds: B:S.51, B:Q.98, B:G.99, B:R.100, B:N.185, B:D.214, B:R.217, B:R.217, B:S.254, B:K.257
- Salt bridges: B:R.100, B:R.217, B:K.256, B:K.257, B:R.404
- pi-Stacking: B:F.123
P61.7: 22 residues within 4Å:- Chain C: F.36, T.49, S.51, Q.98, G.99, R.100, E.103, F.123, T.124, T.125, N.185, D.214, T.216, R.217, S.254, K.256, K.257, M.379, R.381, R.404, F.449
- Chain D: Y.71
22 PLIP interactions:19 interactions with chain C, 3 interactions with chain D- Hydrophobic interactions: C:F.123, C:T.125, D:Y.71
- Hydrogen bonds: C:S.51, C:Q.98, C:G.99, C:R.100, C:N.185, C:D.214, C:R.217, C:R.217, C:S.254, C:K.257, C:R.381
- Salt bridges: C:R.100, C:R.217, C:K.257, C:K.257, C:R.404
- pi-Stacking: C:F.123
- Water bridges: D:Y.71, D:Y.291
P61.10: 21 residues within 4Å:- Chain C: Y.71
- Chain D: T.49, S.51, Q.98, G.99, R.100, E.103, F.123, T.124, T.125, T.126, N.185, D.214, T.216, R.217, S.254, K.256, K.257, M.379, R.404, F.449
24 PLIP interactions:3 interactions with chain C, 21 interactions with chain D- Hydrophobic interactions: C:Y.71, D:F.123
- Water bridges: C:Y.71, C:Y.71, D:K.256
- Hydrogen bonds: D:T.49, D:S.51, D:Q.98, D:G.99, D:R.100, D:T.126, D:N.185, D:D.214, D:T.216, D:R.217, D:R.217, D:S.254, D:K.257
- Salt bridges: D:R.100, D:R.217, D:K.256, D:K.257, D:R.404
- pi-Stacking: D:F.123
- 2 x P33: 3,6,9,12,15,18-HEXAOXAICOSANE-1,20-DIOL(Non-covalent)
P33.4: 11 residues within 4Å:- Chain A: Y.3, Y.324, Y.414, D.418
- Chain D: Y.3, Y.324, A.415, D.418, V.419, D.422, K.426
11 PLIP interactions:5 interactions with chain D, 6 interactions with chain A- Hydrogen bonds: D:D.418, D:D.422, D:K.426, A:A.5, A:Y.324
- Water bridges: D:Y.3, D:Y.3, A:Y.3, A:Y.3, A:D.418, A:D.418
P33.9: 11 residues within 4Å:- Chain B: Y.3, Y.324, A.415, D.418, V.419, D.422, K.426
- Chain C: Y.3, Y.324, Y.414, D.418
6 PLIP interactions:3 interactions with chain B, 3 interactions with chain C- Hydrogen bonds: B:K.426, C:A.5
- Water bridges: B:Y.3, B:Y.3, C:Y.3, C:Y.3
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Phillips, R.S. et al., Crystal Structures of Wild-Type and F448A Mutant Citrobacter freundii Tyrosine Phenol-Lyase Complexed with a Substrate and Inhibitors: Implications for the Reaction Mechanism. Biochemistry (2018)
- Release Date
- 2018-10-10
- Peptides
- Tyrosine phenol-lyase: ABCD
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
BC
AD
B
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.26 Å
- Oligo State
- homo-tetramer
- Ligands
- 4 x K: POTASSIUM ION(Non-covalent)
- 4 x P61: (2E)-3-(3-fluoro-4-hydroxyphenyl)-2-{[(Z)-{3-hydroxy-2-methyl-5-[(phosphonooxy)methyl]pyridin-4(1H)-ylidene}methyl]imino}propanoic acid(Non-covalent)
- 2 x P33: 3,6,9,12,15,18-HEXAOXAICOSANE-1,20-DIOL(Non-covalent)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Phillips, R.S. et al., Crystal Structures of Wild-Type and F448A Mutant Citrobacter freundii Tyrosine Phenol-Lyase Complexed with a Substrate and Inhibitors: Implications for the Reaction Mechanism. Biochemistry (2018)
- Release Date
- 2018-10-10
- Peptides
- Tyrosine phenol-lyase: ABCD
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
BC
AD
B