SMTL ID : 6dzv.1

Wild type human serotonin transporter in complex with 15B8 Fab bound to ibogaine in occluded conformation

Coordinates

PDB Format Compare

Method

ELECTRON MICROSCOPY 4.20 Å

Oligo State

hetero-1-1-1-mer

Ligands

1 x NAG- NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG-NAG.1: 5 residues within 4Å: Chain A: N.127, G.129, N.130, H.145 Chain B: S.103 No protein-ligand interaction detected (PLIP)

1 x HJM: (5beta)-12-methoxyibogamine(Non-covalent)

HJM.2: 11 residues within 4Å: Chain A: Y.17, D.20, A.91, I.94, F.257, S.258, L.259, G.260, F.263, S.360, T.361 7 PLIP interactions: 7 interactions with chain A Hydrophobic interactions: A:Y.17, A:A.91, A:I.94, A:F.263, A:F.263 Salt bridges: A:D.20 pi-Stacking: A:F.263

1 x Y01: CHOLESTEROL HEMISUCCINATE(Non-covalent)

Y01.3: 4 residues within 4Å: Chain A: K.7, L.12, Q.281, V.289 3 PLIP interactions: 3 interactions with chain A Hydrophobic interactions: A:L.12, A:V.289 Salt bridges: A:K.7

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Coleman, J.A. et al., Serotonin transporter-ibogaine complexes illuminate mechanisms of inhibition and transport. Nature (2019)

Release Date

2019-04-24

Peptides

Sodium-dependent serotonin transporter: A
15B8 antibody heavy chain: B
15B8 antibody light chain: C

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

Membrane

We predict this structure to be a membrane protein.
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Sodium-dependent serotonin transporter

15B8 antibody heavy chain

15B8 antibody light chain

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