SMTL ID : 6dzw.1

Cryo-EM structure of the ts2-inactive human serotonin transporter in complex with paroxetine and 15B8 Fab and 8B6 ScFv

Coordinates

PDB Format

Method

ELECTRON MICROSCOPY 4.30 Å

Oligo State

hetero-1-1-1-1-mer

Ligands

1 x NAG- NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG-NAG.1: 4 residues within 4Å: Chain A: N.127, N.130, H.145, Q.489 No protein-ligand interaction detected (PLIP)

1 x 8PR: Paroxetine(Non-covalent)

8PR.2: 14 residues within 4Å: Chain A: Y.17, D.20, A.91, I.94, Y.98, F.257, S.258, L.259, G.260, S.360, T.361, G.364, T.419, V.423 6 PLIP interactions: 6 interactions with chain A Hydrophobic interactions: A:I.94, A:I.94 Hydrogen bonds: A:Y.17, A:T.361 pi-Stacking: A:Y.98 Halogen bonds: A:T.419

1 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG.3: 4 residues within 4Å: Chain A: E.137, D.138, N.139 Chain B: Y.187 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:N.139

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Coleman, J.A. et al., Serotonin transporter-ibogaine complexes illuminate mechanisms of inhibition and transport. Nature (2019)

Release Date

2019-04-24

Peptides

Sodium-dependent serotonin transporter: A
8B6 antibody single chain: B
15B8 antibody heavy chain: C
15B8 antibody light chain: D

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
V

C
H

D
L

Membrane

We predict this structure to be a membrane protein.
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Sodium-dependent serotonin transporter

8B6 antibody single chain

15B8 antibody heavy chain

15B8 antibody light chain

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