SMTL ID : 6dzz.1

Cryo-EM Structure of the wild-type human serotonin transporter in complex with ibogaine and 15B8 Fab in the inward conformation

Coordinates

PDB Format Compare

Method

ELECTRON MICROSCOPY 3.60 Å

Oligo State

hetero-1-1-1-mer

Ligands

1 x NAG- NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG-NAG.1: 5 residues within 4Å: Chain A: G.130, N.131, H.146, T.148, E.153 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:H.146

1 x HJM: (5beta)-12-methoxyibogamine(Non-covalent)

HJM.2: 12 residues within 4Å: Chain A: D.21, A.92, I.95, A.96, Y.99, N.100, F.258, F.264, S.361, T.362, G.365, L.366 10 PLIP interactions: 10 interactions with chain A Hydrophobic interactions: A:A.92, A:I.95, A:Y.99, A:F.258, A:F.258, A:F.264, A:L.366 Hydrogen bonds: A:N.100, A:G.365 Salt bridges: A:D.21

1 x LMT: DODECYL-BETA-D-MALTOSIDE(Non-covalent)

LMT.3: 8 residues within 4Å: Chain A: L.184, V.188, V.197, K.198, V.203, L.352, L.359, F.363 4 PLIP interactions: 4 interactions with chain A Hydrophobic interactions: A:L.184, A:V.188, A:L.352, A:L.359

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Coleman, J.A. et al., Serotonin transporter-ibogaine complexes illuminate mechanisms of inhibition and transport. Nature (2019)

Release Date

2019-04-24

Peptides

Sodium-dependent serotonin transporter: A
15B8 antibody heavy chain: B
15B8 antibody light chain: C

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

Membrane

We predict this structure to be a membrane protein.
Show / Hide

Sodium-dependent serotonin transporter

15B8 antibody heavy chain

15B8 antibody light chain

Related Entries With Identical Sequence