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SMTL ID : 6e06.2
(1 other biounit)
Crystal structure of Mycobacterium tuberculosis dethiobiotin synthetase in complex with cytidine triphosphate solved by precipitant-ligand exchange (crystals grown in citrate precipitant)
Coordinates
PDB Format
Compare
Method
X-RAY DIFFRACTION 2.50 Å
Oligo State
homo-dimer
Ligands
2 x
CTP
:
CYTIDINE-5'-TRIPHOSPHATE
(Non-covalent)
CTP.1:
18 residues within 4Å:
Chain A:
T.20
,
G.21
,
V.22
,
G.23
,
K.24
,
T.25
,
V.26
,
R.54
,
D.58
,
E.117
,
G.120
,
G.178
,
L.205
,
P.206
,
G.208
,
A.209
,
A.210
Ligands:
MG.2
19
PLIP interactions
:
19 interactions with chain A
Hydrophobic interactions:
A:V.26
Hydrogen bonds:
A:G.21
,
A:V.22
,
A:G.23
,
A:K.24
,
A:T.25
,
A:T.25
,
A:T.25
,
A:V.26
,
A:R.54
,
A:G.120
,
A:G.178
,
A:G.208
,
A:A.209
,
A:A.210
Water bridges:
A:K.46
Salt bridges:
A:K.24
,
A:K.24
,
A:K.46
CTP.3:
19 residues within 4Å:
Chain B:
T.20
,
G.21
,
V.22
,
G.23
,
K.24
,
T.25
,
V.26
,
K.46
,
D.58
,
E.117
,
G.120
,
G.178
,
S.179
,
L.205
,
P.206
,
G.208
,
A.209
,
A.210
Ligands:
MG.4
16
PLIP interactions
:
16 interactions with chain B
Hydrophobic interactions:
B:V.26
Hydrogen bonds:
B:G.21
,
B:V.22
,
B:G.23
,
B:K.24
,
B:T.25
,
B:V.26
,
B:G.120
,
B:G.178
,
B:G.208
,
B:A.209
,
B:A.210
Water bridges:
B:D.58
Salt bridges:
B:K.24
,
B:K.24
,
B:K.46
2 x
MG
:
MAGNESIUM ION
(Non-covalent)
MG.2:
5 residues within 4Å:
Chain A:
T.25
,
K.46
,
D.58
,
E.117
Ligands:
CTP.1
4
PLIP interactions
:
3 interactions with chain A
,
1 Ligand-Water interactions
Metal complexes:
A:T.25
,
A:D.58
,
A:E.117
,
H
2
O.1
MG.4:
4 residues within 4Å:
Chain B:
T.25
,
D.58
,
E.117
Ligands:
CTP.3
4
PLIP interactions
:
3 interactions with chain B
,
1 Ligand-Water interactions
Metal complexes:
B:T.25
,
B:D.58
,
B:E.117
,
H
2
O.3
Links
RCSB
PDBe
PDBe-KB
PDBj
PDBsum
CATH
PLIP
Citation
Thompson, A.P. et al., Precipitant-ligand exchange technique reveals the ADP binding mode in Mycobacterium tuberculosis dethiobiotin synthetase. Acta Crystallogr D Struct Biol (2018)
Release Date
2018-10-17
Peptides
ATP-dependent dethiobiotin synthetase BioD:
A
B
SMTL:PDB
SMTL Chain Id:
PDB Chain Id:
A
C
B
D
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ATP-dependent dethiobiotin synthetase BioD
Related Entries With Identical Sequence
6cve.1
|
6cve.2
|
6cvf.1
|
6cvf.2
|
6cvu.1
|
6cvu.2
|
6cvv.1
|
6cvv.2
|
6czb.1
|
6czb.2
|
6czc.1
|
6czc.2
|
6czd.1
|
6czd.2
|
6cze.1
|
6cze.2
|
6e05.1
|
6e05.2
|
6e06.1
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