SMTL ID : 6e08.1

Crystal structure of G6PD in complex with structural NADP

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.90 Å

Oligo State

monomer

Ligands

1 x NAP: NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE(Non-covalent)

NAP.1: 15 residues within 4Å: Chain A: K.238, K.366, R.370, R.393, Y.401, K.403, D.421, T.423, R.487, D.493, M.496, F.501, Y.503, Y.507, W.509 30 PLIP interactions: 30 interactions with chain A Hydrogen bonds: A:R.370, A:R.370, A:R.393, A:R.393, A:D.421, A:R.487 Water bridges: A:K.238, A:K.238, A:R.357, A:Y.401, A:Y.401, A:K.403, A:T.423, A:D.493, A:D.493, A:Y.503, A:Y.503 Salt bridges: A:K.238, A:K.366, A:R.370, A:R.370, A:K.403, A:K.403, A:R.487 pi-Stacking: A:Y.401, A:Y.503, A:Y.503, A:W.509, A:W.509 pi-Cation interactions: A:R.487

5 x GOL: GLYCEROL(Non-functional Binders)

GOL.2: 1 residues within 4Å: Chain A: D.375 1 PLIP interactions: 1 interactions with chain A Water bridges: A:D.375 GOL.3: 6 residues within 4Å: Chain A: K.293, C.294, I.295, S.296, E.345, R.463 6 PLIP interactions: 6 interactions with chain A Hydrogen bonds: A:C.294 Water bridges: A:S.296, A:E.345, A:R.463, A:R.463, A:R.463 GOL.4: 7 residues within 4Å: Chain A: K.171, H.201, F.237, E.239, D.258, V.259, H.263 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:H.201, A:E.239 Water bridges: A:K.171, A:K.171, A:K.360 GOL.5: 1 residues within 4Å: Chain A: Y.343 1 PLIP interactions: 1 interactions with chain A Water bridges: A:D.350 GOL.6: 3 residues within 4Å: Chain A: K.497, R.498, V.499 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:K.497

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Hwang, S. et al., Correcting glucose-6-phosphate dehydrogenase deficiency with a small-molecule activator. Nat Commun (2018)

Release Date

2018-07-25

Peptides

Glucose-6-phosphate 1-dehydrogenase: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
L

Glucose-6-phosphate 1-dehydrogenase

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