SMTL ID : 6e0e.1

Crystal structure of Glucokinase in complex with compound 6

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.70 Å

Oligo State

monomer

Ligands

1 x GLC: alpha-D-glucopyranose(Non-covalent)

GLC.1: 15 residues within 4Å: Chain A: S.138, F.139, P.140, T.155, K.156, N.191, D.192, T.193, I.212, G.216, C.217, N.218, E.243, Q.274, E.277 14 PLIP interactions: 14 interactions with chain A Hydrogen bonds: A:T.155, A:T.155, A:K.156, A:N.191, A:N.191, A:N.218, A:E.243, A:E.243, A:Q.274 Water bridges: A:K.156, A:D.192, A:D.192, A:G.216 Salt bridges: A:K.156

1 x HKM: 2-({2-[(4-methyl-1,3-thiazol-2-yl)amino]pyridin-3-yl}oxy)benzonitrile(Non-covalent)

HKM.2: 14 residues within 4Å: Chain A: Y.48, V.49, R.50, S.51, P.53, I.146, M.197, I.198, Y.201, C.207, M.222, V.439, V.442, K.446 5 PLIP interactions: 5 interactions with chain A Hydrophobic interactions: A:I.146, A:Y.201, A:Y.201 Hydrogen bonds: A:R.50, A:R.50

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Hinklin, R.J. et al., Discovery and preclinical development of AR453588 as an anti-diabetic glucokinase activator. Bioorg.Med.Chem. (2020)

Release Date

2019-07-10

Peptides

Glucokinase: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Glucokinase