SMTL ID : 6e0l.1

Structure of Rhodothermus marinus CdnE c-UMP-AMP synthase with Apcpp and Upnpp

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.25 Å

Oligo State

monomer

Ligands

1 x MG: MAGNESIUM ION(Non-covalent)

MG.1: 3 residues within 4Å: Chain A: D.60, D.62 Ligands: APC.2 3 PLIP interactions: 1 interactions with chain A, 2 Ligand-Water interactions Metal complexes: A:D.62, H2O.3, H2O.3

1 x APC: DIPHOSPHOMETHYLPHOSPHONIC ACID ADENOSYL ESTER(Non-covalent)

APC.2: 13 residues within 4Å: Chain A: Q.46, G.47, S.48, D.62, N.166, K.194, S.212, Y.213, F.214, E.216, E.265 Ligands: MG.1, 2KH.3 17 PLIP interactions: 17 interactions with chain A Hydrogen bonds: A:G.47, A:S.48, A:S.48, A:S.212, A:E.265 Water bridges: A:Q.46, A:Q.46, A:G.47, A:Y.49, A:Y.49, A:N.51, A:S.59, A:K.194, A:Y.213 Salt bridges: A:K.194 pi-Stacking: A:Y.213, A:Y.213

1 x 2KH: 5'-O-[(S)-hydroxy{[(S)-hydroxy(phosphonooxy)phosphoryl]amino}phosphoryl]uridine(Non-covalent)

2KH.3: 13 residues within 4Å: Chain A: Q.46, D.62, G.115, R.116, K.117, T.118, K.120, V.131, F.155, V.164, N.166, E.265 Ligands: APC.2 10 PLIP interactions: 10 interactions with chain A Hydrophobic interactions: A:K.117 Hydrogen bonds: A:Q.46, A:R.116, A:K.117, A:K.117, A:T.118, A:N.166, A:N.166 Water bridges: A:D.62 Salt bridges: A:K.120

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Whiteley, A.T. et al., Bacterial cGAS-like enzymes synthesize diverse nucleotide signals. Nature (2019)

Release Date

2019-02-20

Peptides

cGAS/DncV-like nucleotidyltransferase in E. coli homolog: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

cGAS/DncV-like nucleotidyltransferase in E. coli homolog

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